miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22906 3' -61.9 NC_005137.2 + 99519 0.66 0.651539
Target:  5'- gGCUGGCCGCGcaaguuuuccGcGUuuaacugcgucaGCGCGCUCGCUu -3'
miRNA:   3'- -CGGCCGGCGC----------CaCA------------CGUGCGAGUGGc -5'
22906 3' -61.9 NC_005137.2 + 40385 0.66 0.641671
Target:  5'- uUUGGCUGUGGauuUGUGCA-GC-CACCGa -3'
miRNA:   3'- cGGCCGGCGCC---ACACGUgCGaGUGGC- -5'
22906 3' -61.9 NC_005137.2 + 31626 0.66 0.641671
Target:  5'- uGgCGGCCaaCGGUcaGUGCACGCgCGCgGa -3'
miRNA:   3'- -CgGCCGGc-GCCA--CACGUGCGaGUGgC- -5'
22906 3' -61.9 NC_005137.2 + 100127 0.66 0.606142
Target:  5'- -gUGGCUGCGGcgcauuggcguucggUcGUGCACGCUUugCa -3'
miRNA:   3'- cgGCCGGCGCC---------------A-CACGUGCGAGugGc -5'
22906 3' -61.9 NC_005137.2 + 58840 0.66 0.602203
Target:  5'- aGuuGGCCGU--UGUGCGCGUuaUUGCCa -3'
miRNA:   3'- -CggCCGGCGccACACGUGCG--AGUGGc -5'
22906 3' -61.9 NC_005137.2 + 16895 0.67 0.56306
Target:  5'- uCCGGaaGCGGUGcagacGCACGCggCGCuCGg -3'
miRNA:   3'- cGGCCggCGCCACa----CGUGCGa-GUG-GC- -5'
22906 3' -61.9 NC_005137.2 + 99961 0.68 0.534151
Target:  5'- -aCGGCCGCGGcc-GCGCGCcucuucgugCGCCa -3'
miRNA:   3'- cgGCCGGCGCCacaCGUGCGa--------GUGGc -5'
22906 3' -61.9 NC_005137.2 + 93669 0.68 0.496474
Target:  5'- cGCCGGCCGCGuagaUGCGCaacagGCccagCGCCGg -3'
miRNA:   3'- -CGGCCGGCGCcac-ACGUG-----CGa---GUGGC- -5'
22906 3' -61.9 NC_005137.2 + 24312 0.68 0.487239
Target:  5'- -gCGGCUGCGGUGgugGCGgGCacgGCCGu -3'
miRNA:   3'- cgGCCGGCGCCACa--CGUgCGag-UGGC- -5'
22906 3' -61.9 NC_005137.2 + 31701 0.69 0.442364
Target:  5'- -gCGGUCGCaccgacGUGUGCACGUUCGCg- -3'
miRNA:   3'- cgGCCGGCGc-----CACACGUGCGAGUGgc -5'
22906 3' -61.9 NC_005137.2 + 35535 0.69 0.44149
Target:  5'- gGCCGGCCGUGGgcaacacggcgcuUGUcaaGaCACGCacCGCCGg -3'
miRNA:   3'- -CGGCCGGCGCC-------------ACA---C-GUGCGa-GUGGC- -5'
22906 3' -61.9 NC_005137.2 + 119851 0.7 0.383683
Target:  5'- aUCGGgCGUGGUG-GCACGCgcaGCCa -3'
miRNA:   3'- cGGCCgGCGCCACaCGUGCGag-UGGc -5'
22906 3' -61.9 NC_005137.2 + 80923 0.7 0.382883
Target:  5'- uGCgCGGCCGUGGag-GCGCGCgucaauggccaauUCACCa -3'
miRNA:   3'- -CG-GCCGGCGCCacaCGUGCG-------------AGUGGc -5'
22906 3' -61.9 NC_005137.2 + 120281 0.7 0.375731
Target:  5'- uGCUGGCCGaCGcGUgcgcgaugcgGUGCACGC-CAUCGa -3'
miRNA:   3'- -CGGCCGGC-GC-CA----------CACGUGCGaGUGGC- -5'
22906 3' -61.9 NC_005137.2 + 60756 0.71 0.330403
Target:  5'- aGCCGGCCGacauuuGGcccGUGCGCGuUUCGCCu -3'
miRNA:   3'- -CGGCCGGCg-----CCa--CACGUGC-GAGUGGc -5'
22906 3' -61.9 NC_005137.2 + 31247 0.72 0.289234
Target:  5'- -aUGGCCGCGucGUGCGCGCUCAacUCGg -3'
miRNA:   3'- cgGCCGGCGCcaCACGUGCGAGU--GGC- -5'
22906 3' -61.9 NC_005137.2 + 31053 0.73 0.263488
Target:  5'- cGCgCGGCCGCGGccguuguccaacaUGcGUGCGCgUCGCCGa -3'
miRNA:   3'- -CG-GCCGGCGCC-------------ACaCGUGCG-AGUGGC- -5'
22906 3' -61.9 NC_005137.2 + 60004 0.82 0.067656
Target:  5'- cGCCgcgaauuaGGCCGCGGUcGUGCACGUaaUCGCCGu -3'
miRNA:   3'- -CGG--------CCGGCGCCA-CACGUGCG--AGUGGC- -5'
22906 3' -61.9 NC_005137.2 + 20565 1.1 0.000711
Target:  5'- cGCCGGCCGCGGUGUGCACGCUCACCGu -3'
miRNA:   3'- -CGGCCGGCGCCACACGUGCGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.