miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 5' -55.3 NC_005137.2 + 104084 0.66 0.92821
Target:  5'- ---uUGGCCGGCUCguuguGACGCCauGUGCg -3'
miRNA:   3'- gguuGCCGGCUGAGg----UUGCGG--CAUGa -5'
22909 5' -55.3 NC_005137.2 + 95156 0.67 0.87119
Target:  5'- gCAACGcGCaCGAaugCCAccgcacauugACGCCGUGCa -3'
miRNA:   3'- gGUUGC-CG-GCUga-GGU----------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 11263 0.67 0.892281
Target:  5'- uCCAGCGGCgcUGACgUCCGcuacGCGCUG-ACg -3'
miRNA:   3'- -GGUUGCCG--GCUG-AGGU----UGCGGCaUGa -5'
22909 5' -55.3 NC_005137.2 + 24528 0.67 0.892281
Target:  5'- uUggUGGCCGuuUgCAucaagACGCCGUACUu -3'
miRNA:   3'- gGuuGCCGGCugAgGU-----UGCGGCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 45672 0.67 0.892281
Target:  5'- aCCAACguGGgCGGCggcgCCAACGCgGaUGCUc -3'
miRNA:   3'- -GGUUG--CCgGCUGa---GGUUGCGgC-AUGA- -5'
22909 5' -55.3 NC_005137.2 + 61398 0.66 0.905203
Target:  5'- -uGGCGGCCGACguaagaAACGCCGc--- -3'
miRNA:   3'- ggUUGCCGGCUGagg---UUGCGGCauga -5'
22909 5' -55.3 NC_005137.2 + 31631 0.66 0.915448
Target:  5'- gCCAACGGUCagugcacgcgcgcgGACgcgaCC-ACGCUGUGCa -3'
miRNA:   3'- -GGUUGCCGG--------------CUGa---GGuUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 72179 0.66 0.917184
Target:  5'- aCAACGGCCaACUuuGACGUgaaagaGUACa -3'
miRNA:   3'- gGUUGCCGGcUGAggUUGCGg-----CAUGa -5'
22909 5' -55.3 NC_005137.2 + 122702 0.66 0.917184
Target:  5'- gUAACGGCCGuugCCAAgGUuacgCGUGCUg -3'
miRNA:   3'- gGUUGCCGGCugaGGUUgCG----GCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 95627 0.67 0.87119
Target:  5'- uUAACGaGUCGuuuuUUCCGcguGCGCCGUGCg -3'
miRNA:   3'- gGUUGC-CGGCu---GAGGU---UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 99958 0.67 0.863722
Target:  5'- aCAACGGCCG-CggCCGcGCGCCucuucGUGCg -3'
miRNA:   3'- gGUUGCCGGCuGa-GGU-UGCGG-----CAUGa -5'
22909 5' -55.3 NC_005137.2 + 31218 0.67 0.861441
Target:  5'- aCCAGCGGUCGcggcACaCCAgcuugaacauggccGCGUCGUGCg -3'
miRNA:   3'- -GGUUGCCGGC----UGaGGU--------------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 86670 0.73 0.598662
Target:  5'- cCCAACaGCCGACUUgAACGCaCGUcGCc -3'
miRNA:   3'- -GGUUGcCGGCUGAGgUUGCG-GCA-UGa -5'
22909 5' -55.3 NC_005137.2 + 46519 0.69 0.769293
Target:  5'- cCUcgUGGCCaGCUCCAACGCCaGUuauuuGCUg -3'
miRNA:   3'- -GGuuGCCGGcUGAGGUUGCGG-CA-----UGA- -5'
22909 5' -55.3 NC_005137.2 + 74723 0.69 0.787904
Target:  5'- uCCAGCGGCacuuCGcAgUCCAugGCCGUuuuguGCg -3'
miRNA:   3'- -GGUUGCCG----GC-UgAGGUugCGGCA-----UGa -5'
22909 5' -55.3 NC_005137.2 + 49039 0.68 0.823369
Target:  5'- cCUAGCGaCCGGCaCCGACagguaGCCGUGCg -3'
miRNA:   3'- -GGUUGCcGGCUGaGGUUG-----CGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 103774 0.68 0.823369
Target:  5'- cCCAGCGGCCuuCUUugUAAUGCUGUugUu -3'
miRNA:   3'- -GGUUGCCGGcuGAG--GUUGCGGCAugA- -5'
22909 5' -55.3 NC_005137.2 + 59304 0.68 0.82677
Target:  5'- uCC-ACGGCCGACUCgguauuuuuacuuauUAGgGCCGgACUg -3'
miRNA:   3'- -GGuUGCCGGCUGAG---------------GUUgCGGCaUGA- -5'
22909 5' -55.3 NC_005137.2 + 85083 0.68 0.848164
Target:  5'- cCCAAauCGGgCGAUuugCCAguaaacACGCCGUGCa -3'
miRNA:   3'- -GGUU--GCCgGCUGa--GGU------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 2436 0.68 0.856045
Target:  5'- gCggUGGCCGACgugCCcGCGCCcgACg -3'
miRNA:   3'- gGuuGCCGGCUGa--GGuUGCGGcaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.