miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22926 5' -52.6 NC_005137.2 + 38255 0.66 0.974042
Target:  5'- -gGGAACcgcguUGCCCGUgggcuugUCCGUGgcGGu -3'
miRNA:   3'- caCUUUGu----ACGGGCGa------AGGCGCuaCC- -5'
22926 5' -52.6 NC_005137.2 + 5581 0.66 0.964913
Target:  5'- -gGAGACGUGUauggCCGUUUuuGCGGcauUGGc -3'
miRNA:   3'- caCUUUGUACG----GGCGAAggCGCU---ACC- -5'
22926 5' -52.6 NC_005137.2 + 96036 0.66 0.961423
Target:  5'- -cGAcGCAccaUGCCCGUgUCgGCGGUGu -3'
miRNA:   3'- caCUuUGU---ACGGGCGaAGgCGCUACc -5'
22926 5' -52.6 NC_005137.2 + 77306 0.67 0.957315
Target:  5'- uGUGGccaaaacGGCcgGCUCGuCUUCCGCGGUc- -3'
miRNA:   3'- -CACU-------UUGuaCGGGC-GAAGGCGCUAcc -5'
22926 5' -52.6 NC_005137.2 + 21311 0.67 0.945083
Target:  5'- aUGccACAUGCCCGCgugcggUuuGCGGUa- -3'
miRNA:   3'- cACuuUGUACGGGCGa-----AggCGCUAcc -5'
22926 5' -52.6 NC_005137.2 + 89106 0.68 0.919044
Target:  5'- --cAAACAgucUGUCCGCUUCCGUGGg-- -3'
miRNA:   3'- cacUUUGU---ACGGGCGAAGGCGCUacc -5'
22926 5' -52.6 NC_005137.2 + 88946 0.69 0.872053
Target:  5'- ----cGCGUuucGCCCGCgccaaucUCCGUGAUGGg -3'
miRNA:   3'- cacuuUGUA---CGGGCGa------AGGCGCUACC- -5'
22926 5' -52.6 NC_005137.2 + 50848 0.7 0.840075
Target:  5'- --aAGACGUGCCCGCcaaCGCGAuuuguuUGGg -3'
miRNA:   3'- cacUUUGUACGGGCGaagGCGCU------ACC- -5'
22926 5' -52.6 NC_005137.2 + 88185 0.71 0.822849
Target:  5'- cGUGGug---GCCCGCcUCgGCGGUGGc -3'
miRNA:   3'- -CACUuuguaCGGGCGaAGgCGCUACC- -5'
22926 5' -52.6 NC_005137.2 + 2438 0.71 0.813955
Target:  5'- gGUGGccGACGUGCCCGCgcCCGaCGAc-- -3'
miRNA:   3'- -CACU--UUGUACGGGCGaaGGC-GCUacc -5'
22926 5' -52.6 NC_005137.2 + 27978 1.11 0.003814
Target:  5'- uGUGAAACAUGCCCGCUUCCGCGAUGGa -3'
miRNA:   3'- -CACUUUGUACGGGCGAAGGCGCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.