miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22927 3' -55.5 NC_005137.2 + 87334 0.66 0.902241
Target:  5'- aCGGCgCA-GCUGgccaaccGCAUGGCGGACa-- -3'
miRNA:   3'- -GCUG-GUgCGACa------CGUAUCGCCUGcug -5'
22927 3' -55.5 NC_005137.2 + 61342 0.66 0.895716
Target:  5'- gCGugUACaUUGUGC--GGCGaGACGACg -3'
miRNA:   3'- -GCugGUGcGACACGuaUCGC-CUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 47639 0.66 0.888955
Target:  5'- cCGACUugGCUGagauUGCAagggggcucaUGGCGGccaACGAg -3'
miRNA:   3'- -GCUGGugCGAC----ACGU----------AUCGCC---UGCUg -5'
22927 3' -55.5 NC_005137.2 + 56676 0.66 0.881962
Target:  5'- cCGACgGCGCUGUGgaCGUGacCGGACG-Cg -3'
miRNA:   3'- -GCUGgUGCGACAC--GUAUc-GCCUGCuG- -5'
22927 3' -55.5 NC_005137.2 + 70579 0.66 0.881962
Target:  5'- -aAUCAUGCguucGUGCugcGCGGGCGGCu -3'
miRNA:   3'- gcUGGUGCGa---CACGuauCGCCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 31384 0.66 0.88125
Target:  5'- gCGGCCAUGUucaagcuggUGUGCGcgaccgcUGGUacaaGGGCGACg -3'
miRNA:   3'- -GCUGGUGCG---------ACACGU-------AUCG----CCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 47729 0.67 0.874741
Target:  5'- uGACCGCGCUGUuuGCAgcaagGGCcccguuuucGGGCG-Cu -3'
miRNA:   3'- gCUGGUGCGACA--CGUa----UCG---------CCUGCuG- -5'
22927 3' -55.5 NC_005137.2 + 63898 0.67 0.867298
Target:  5'- --cCCACGUUGUauuugcgauGCuUGGCGGACGGu -3'
miRNA:   3'- gcuGGUGCGACA---------CGuAUCGCCUGCUg -5'
22927 3' -55.5 NC_005137.2 + 117574 0.67 0.835418
Target:  5'- aGugCGcCGCcgGUGCGgcuGaCGGGCGACg -3'
miRNA:   3'- gCugGU-GCGa-CACGUau-C-GCCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 101153 0.68 0.826955
Target:  5'- aCGGCCGCgGUUGgacagGCGUGGCaGGcuAUGACg -3'
miRNA:   3'- -GCUGGUG-CGACa----CGUAUCG-CC--UGCUG- -5'
22927 3' -55.5 NC_005137.2 + 122477 0.68 0.824381
Target:  5'- gCGGCCACGCuUGUGCAagacauuauUcGCgcucucaacaacacGGGCGGCa -3'
miRNA:   3'- -GCUGGUGCG-ACACGU---------AuCG--------------CCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 115263 0.68 0.82179
Target:  5'- uGGCgACGCUGgcgccgcgaccuugGCGagcAGCGGACGAg -3'
miRNA:   3'- gCUGgUGCGACa-------------CGUa--UCGCCUGCUg -5'
22927 3' -55.5 NC_005137.2 + 60628 0.68 0.818311
Target:  5'- cCGACCGacaGCgGUGCAcgcCGGACGAg -3'
miRNA:   3'- -GCUGGUg--CGaCACGUaucGCCUGCUg -5'
22927 3' -55.5 NC_005137.2 + 31151 0.68 0.818311
Target:  5'- cCGACCA-GC-GUGCGcGGUugGGACGACc -3'
miRNA:   3'- -GCUGGUgCGaCACGUaUCG--CCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 59047 0.68 0.809493
Target:  5'- aGAUUgugaGCGUUGUGCAaacguuuGUGGACGGCu -3'
miRNA:   3'- gCUGG----UGCGACACGUau-----CGCCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 79646 0.68 0.808603
Target:  5'- uGGCauaaACGCguuaaacacgguuUGUGCAggcgcggcGGCGGACGACc -3'
miRNA:   3'- gCUGg---UGCG-------------ACACGUa-------UCGCCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 1212 0.68 0.800511
Target:  5'- uCGGCCAUGUUGUGCG-AGCGu-CGuACg -3'
miRNA:   3'- -GCUGGUGCGACACGUaUCGCcuGC-UG- -5'
22927 3' -55.5 NC_005137.2 + 104080 0.68 0.791372
Target:  5'- aCGACCuuGUUGUGUcgGUGGCcaaaguGGACGAg -3'
miRNA:   3'- -GCUGGugCGACACG--UAUCG------CCUGCUg -5'
22927 3' -55.5 NC_005137.2 + 64798 0.68 0.791372
Target:  5'- -aGCCGCGCcaacaUGUGCAccgaauCGGGCGACg -3'
miRNA:   3'- gcUGGUGCG-----ACACGUauc---GCCUGCUG- -5'
22927 3' -55.5 NC_005137.2 + 3348 0.69 0.782086
Target:  5'- gGGCCGCGCgGUGCAauaccCGGAaGACg -3'
miRNA:   3'- gCUGGUGCGaCACGUauc--GCCUgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.