Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22933 | 5' | -55.8 | NC_005137.2 | + | 118000 | 0.65 | 0.909605 |
Target: 5'- --aCGCGUcCGUGCugGugguugccccggugGCGGgAUCGg -3' miRNA: 3'- caaGCGCGuGCACGugC--------------UGCCgUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 84588 | 0.66 | 0.905287 |
Target: 5'- -gUCGgGCACGUGCuucauACGGuCGUUGa -3' miRNA: 3'- caAGCgCGUGCACGugc--UGCC-GUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 7175 | 0.66 | 0.905287 |
Target: 5'- -aUCGCGCGCGuUGCAgcgcauuuCGAacCGGCG-CGu -3' miRNA: 3'- caAGCGCGUGC-ACGU--------GCU--GCCGUaGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 110632 | 0.66 | 0.905287 |
Target: 5'- --cCGUGCACaaacGCGcCGACGGCGUUu -3' miRNA: 3'- caaGCGCGUGca--CGU-GCUGCCGUAGc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 1999 | 0.66 | 0.905287 |
Target: 5'- --gCGUGCAcagcuCGUGCACGcuGCGGCGc-- -3' miRNA: 3'- caaGCGCGU-----GCACGUGC--UGCCGUagc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 39621 | 0.66 | 0.905287 |
Target: 5'- --gCGCaGCACaUGUACGAuCGGCGUUc -3' miRNA: 3'- caaGCG-CGUGcACGUGCU-GCCGUAGc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 26840 | 0.66 | 0.898918 |
Target: 5'- cGUUCaGCGCcaucaaACGUucGCACGuGCGuGCGUCGu -3' miRNA: 3'- -CAAG-CGCG------UGCA--CGUGC-UGC-CGUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 50247 | 0.66 | 0.898918 |
Target: 5'- --aCGCGCAUuUGCGCGgccguggagGCGcGCGUCa -3' miRNA: 3'- caaGCGCGUGcACGUGC---------UGC-CGUAGc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 61257 | 0.66 | 0.898918 |
Target: 5'- ---gGCGUugGUGCGCGuuuuuuacGCGGCGc-- -3' miRNA: 3'- caagCGCGugCACGUGC--------UGCCGUagc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 100238 | 0.66 | 0.898918 |
Target: 5'- uUUCaauaaGCACGUGCGCGcgccGCGGCAc-- -3' miRNA: 3'- cAAGcg---CGUGCACGUGC----UGCCGUagc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 103811 | 0.66 | 0.898918 |
Target: 5'- ----uUGCugGUGUGCGGCGGCggGUUGg -3' miRNA: 3'- caagcGCGugCACGUGCUGCCG--UAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 67696 | 0.66 | 0.892314 |
Target: 5'- --gCGCGCGuuUGUGC-CGccucGCGGCGUUGa -3' miRNA: 3'- caaGCGCGU--GCACGuGC----UGCCGUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 17301 | 0.66 | 0.892314 |
Target: 5'- -aUCGUauaauaguuGCGCGUGCugGugACGGCAa-- -3' miRNA: 3'- caAGCG---------CGUGCACGugC--UGCCGUagc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 33720 | 0.66 | 0.892314 |
Target: 5'- aGUUUGCuaaCACGUugGCuacuGCGGCGGCGUUGu -3' miRNA: 3'- -CAAGCGc--GUGCA--CG----UGCUGCCGUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 115133 | 0.66 | 0.892314 |
Target: 5'- aUUCGggcgGCACGUGaC-CGGCGGCAcugUCGu -3' miRNA: 3'- cAAGCg---CGUGCAC-GuGCUGCCGU---AGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 66171 | 0.66 | 0.885479 |
Target: 5'- --aCGCGCAuCG-GCugGgGCGGCAaCGa -3' miRNA: 3'- caaGCGCGU-GCaCGugC-UGCCGUaGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 95336 | 0.66 | 0.885479 |
Target: 5'- --cUGCGUGCGUaGUGC-ACGGCGUCa -3' miRNA: 3'- caaGCGCGUGCA-CGUGcUGCCGUAGc -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 31854 | 0.66 | 0.883384 |
Target: 5'- --aCGUGCACacgucgGUGCgaccgcacaaccacGCGGCGGUGUCGu -3' miRNA: 3'- caaGCGCGUG------CACG--------------UGCUGCCGUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 5567 | 0.66 | 0.878418 |
Target: 5'- --aCGCGCucgcaaugggagACGUGUAUGgccguuuuuGCGGCAUUGg -3' miRNA: 3'- caaGCGCG------------UGCACGUGC---------UGCCGUAGC- -5' |
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22933 | 5' | -55.8 | NC_005137.2 | + | 43979 | 0.66 | 0.878418 |
Target: 5'- -aUCGCGUucgACGgGCGCGgGCGGCugcUCGu -3' miRNA: 3'- caAGCGCG---UGCaCGUGC-UGCCGu--AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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