Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22934 | 3' | -50.2 | NC_005137.2 | + | 128766 | 0.66 | 0.992927 |
Target: 5'- cAAAgGUaAACGCGAUCGCGcgCCc- -3' miRNA: 3'- cUUUgCGcUUGCGUUAGCGCuaGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 9213 | 0.66 | 0.992612 |
Target: 5'- cAAACGCGAugGCAcguucacaauaaacGUCGUGGcuugCCa- -3' miRNA: 3'- cUUUGCGCUugCGU--------------UAGCGCUa---GGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 2401 | 0.66 | 0.991716 |
Target: 5'- -cAACGC--GCGCAAUCGCGccaaauggguaauGUCCg- -3' miRNA: 3'- cuUUGCGcuUGCGUUAGCGC-------------UAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 96476 | 0.66 | 0.987727 |
Target: 5'- ---cCGCGAACGCAacacggugcgcGUCGUG-UCCa- -3' miRNA: 3'- cuuuGCGCUUGCGU-----------UAGCGCuAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 52104 | 0.66 | 0.987727 |
Target: 5'- ---gUGCGGACaGUAAUCGCGAaacgCCUc -3' miRNA: 3'- cuuuGCGCUUG-CGUUAGCGCUa---GGAa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 88281 | 0.67 | 0.986052 |
Target: 5'- aAAACGCGcACGCGuccguuccuuAUCGCG-UCCg- -3' miRNA: 3'- cUUUGCGCuUGCGU----------UAGCGCuAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 112552 | 0.67 | 0.982183 |
Target: 5'- -uGGCGCGccguGCGCGAUCGCGcaAUCa-- -3' miRNA: 3'- cuUUGCGCu---UGCGUUAGCGC--UAGgaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 100023 | 0.67 | 0.97997 |
Target: 5'- ----aGCGGuGCGCAAgcaCGCGGUCCg- -3' miRNA: 3'- cuuugCGCU-UGCGUUa--GCGCUAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 57490 | 0.67 | 0.97997 |
Target: 5'- uGAGACGCGAAUuGCcGUCGCGc-CCa- -3' miRNA: 3'- -CUUUGCGCUUG-CGuUAGCGCuaGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 13631 | 0.68 | 0.969045 |
Target: 5'- ---uUGCGAcugucguuguACGCGAUCGCGuUCCa- -3' miRNA: 3'- cuuuGCGCU----------UGCGUUAGCGCuAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 62726 | 0.68 | 0.962225 |
Target: 5'- -cGugGCGuuuCGCAAUUGCGAaaguaUCCUg -3' miRNA: 3'- cuUugCGCuu-GCGUUAGCGCU-----AGGAa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 34030 | 0.69 | 0.945602 |
Target: 5'- uAAACGC-AACGCAAUCGCGcUCa-- -3' miRNA: 3'- cUUUGCGcUUGCGUUAGCGCuAGgaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 63801 | 0.7 | 0.930387 |
Target: 5'- cGGGCGCG-ACGCGAUgCGCGA-CCg- -3' miRNA: 3'- cUUUGCGCuUGCGUUA-GCGCUaGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 34963 | 0.7 | 0.918903 |
Target: 5'- aGAAACGCu-GCGCAcuGUCGCGuUCCc- -3' miRNA: 3'- -CUUUGCGcuUGCGU--UAGCGCuAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 80258 | 0.7 | 0.918903 |
Target: 5'- -cGGCGCGAACGCcGUgGCGGagguUCCg- -3' miRNA: 3'- cuUUGCGCUUGCGuUAgCGCU----AGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 95491 | 0.71 | 0.885545 |
Target: 5'- cGAACGU--GCGCGuUCGCGGUCCa- -3' miRNA: 3'- cUUUGCGcuUGCGUuAGCGCUAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 28541 | 0.71 | 0.8781 |
Target: 5'- -uGACGUGAACGguggauaAAUCGUGAUCCa- -3' miRNA: 3'- cuUUGCGCUUGCg------UUAGCGCUAGGaa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 111946 | 0.72 | 0.845921 |
Target: 5'- -cGugGUGAGCGUuuuGAUgGCGAUCCUg -3' miRNA: 3'- cuUugCGCUUGCG---UUAgCGCUAGGAa -5' |
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22934 | 3' | -50.2 | NC_005137.2 | + | 41247 | 1.05 | 0.014701 |
Target: 5'- gGAAACGCGAACGCAAUCGCGAUCCUUu -3' miRNA: 3'- -CUUUGCGCUUGCGUUAGCGCUAGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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