Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22935 | 5' | -48.4 | NC_005137.2 | + | 67491 | 0.66 | 0.997576 |
Target: 5'- -----aACGUUugCUGCGUCAaUAUCc -3' miRNA: 3'- aauaacUGCGGugGACGCAGUaAUAG- -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 57481 | 0.66 | 0.997101 |
Target: 5'- ----cGACGCCGuuUGCG-CGUUucGUCa -3' miRNA: 3'- aauaaCUGCGGUggACGCaGUAA--UAG- -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 72459 | 0.66 | 0.997101 |
Target: 5'- ---gUGGCGCCGCguugGCGUCAa---- -3' miRNA: 3'- aauaACUGCGGUGga--CGCAGUaauag -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 24677 | 0.66 | 0.996551 |
Target: 5'- --uUUGcCGCCACC-GCcGUCGUgGUCa -3' miRNA: 3'- aauAACuGCGGUGGaCG-CAGUAaUAG- -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 72860 | 0.66 | 0.995917 |
Target: 5'- gUUGUUGACGCUAaggcGCGUCAgguugUAUUg -3' miRNA: 3'- -AAUAACUGCGGUgga-CGCAGUa----AUAG- -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 45826 | 0.66 | 0.995917 |
Target: 5'- -cGUUGGCGCCGCCgcccaCGUUggUGUa -3' miRNA: 3'- aaUAACUGCGGUGGac---GCAGuaAUAg -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 80167 | 0.67 | 0.993425 |
Target: 5'- -cGUUGcCGCCGuuUGCG-CGUUGUUa -3' miRNA: 3'- aaUAACuGCGGUggACGCaGUAAUAG- -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 55428 | 0.68 | 0.986703 |
Target: 5'- ----cGGCGCCGCCcGCGUCc----- -3' miRNA: 3'- aauaaCUGCGGUGGaCGCAGuaauag -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 35555 | 0.69 | 0.983081 |
Target: 5'- ----gGGCGCgCGCCgauuccaaaugcgucGCGUCAUUGUCc -3' miRNA: 3'- aauaaCUGCG-GUGGa--------------CGCAGUAAUAG- -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 2732 | 0.71 | 0.950554 |
Target: 5'- ----aGGuCGCCACCUGCGUUAa---- -3' miRNA: 3'- aauaaCU-GCGGUGGACGCAGUaauag -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 74663 | 0.73 | 0.884323 |
Target: 5'- ---aUGAgCGUCACCUGCGUCAc---- -3' miRNA: 3'- aauaACU-GCGGUGGACGCAGUaauag -5' |
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22935 | 5' | -48.4 | NC_005137.2 | + | 45714 | 1.09 | 0.010548 |
Target: 5'- aUUAUUGACGCCACCUGCGUCAUUAUCa -3' miRNA: 3'- -AAUAACUGCGGUGGACGCAGUAAUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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