Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22936 | 5' | -54.3 | NC_005137.2 | + | 14005 | 0.66 | 0.931078 |
Target: 5'- cGUGGAUCgggACGUGUUuugcaAUCCCAACAa-- -3' miRNA: 3'- -CACCUGG---UGCGCAG-----UGGGGUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 80376 | 0.66 | 0.931078 |
Target: 5'- ---aACCGCGCagccguUCACCCCAGCAc-- -3' miRNA: 3'- caccUGGUGCGc-----AGUGGGGUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 12954 | 0.67 | 0.894788 |
Target: 5'- uGUGGgacGCCACcCGguccaUUACCCCAACAUUu -3' miRNA: 3'- -CACC---UGGUGcGC-----AGUGGGGUUGUAAu -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 112892 | 0.67 | 0.865693 |
Target: 5'- -cGGGCUGCGCGUa--CCCGACGc-- -3' miRNA: 3'- caCCUGGUGCGCAgugGGGUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 3550 | 0.68 | 0.824361 |
Target: 5'- cGUGGuACCgucGCGCGUCACgCaCAACAc-- -3' miRNA: 3'- -CACC-UGG---UGCGCAGUGgG-GUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 76422 | 0.69 | 0.806471 |
Target: 5'- cUGGACUcggccaACGUGUUuuGCCCCAACGa-- -3' miRNA: 3'- cACCUGG------UGCGCAG--UGGGGUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 88127 | 0.69 | 0.806471 |
Target: 5'- ---aACCACGCGUCGCCCacgGACGg-- -3' miRNA: 3'- caccUGGUGCGCAGUGGGg--UUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 29280 | 0.69 | 0.777441 |
Target: 5'- uUGGACguCGCGUCAagggacgUCCCAACGg-- -3' miRNA: 3'- cACCUGguGCGCAGU-------GGGGUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 82877 | 0.69 | 0.768751 |
Target: 5'- -cGGAUgcaUugGCGUUugUCCAACAUUAu -3' miRNA: 3'- caCCUG---GugCGCAGugGGGUUGUAAU- -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 27892 | 0.7 | 0.728962 |
Target: 5'- cGUGGcggcGCCACGgGUCAUcgCCCGGCAa-- -3' miRNA: 3'- -CACC----UGGUGCgCAGUG--GGGUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 64466 | 0.72 | 0.656289 |
Target: 5'- -cGGGCaaauuggcgcagCGCGCGUCACCCgAGCAa-- -3' miRNA: 3'- caCCUG------------GUGCGCAGUGGGgUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 21242 | 0.75 | 0.480936 |
Target: 5'- -cGGGCCGCGUGUCACCaaAACGg-- -3' miRNA: 3'- caCCUGGUGCGCAGUGGggUUGUaau -5' |
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22936 | 5' | -54.3 | NC_005137.2 | + | 46119 | 1.07 | 0.004077 |
Target: 5'- cGUGGACCACGCGUCACCCCAACAUUAg -3' miRNA: 3'- -CACCUGGUGCGCAGUGGGGUUGUAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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