miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22950 5' -51.5 NC_005137.2 + 9652 0.66 0.978684
Target:  5'- ---aCUUGACACguuuAACCAACAGCGUu -3'
miRNA:   3'- cgacGAGCUGUGgu--UUGGUUGUCGUA- -5'
22950 5' -51.5 NC_005137.2 + 39653 0.66 0.978684
Target:  5'- uGCUGCcaggcuaagCGGCGCCGcACUuuccggugAACAGCAUu -3'
miRNA:   3'- -CGACGa--------GCUGUGGUuUGG--------UUGUCGUA- -5'
22950 5' -51.5 NC_005137.2 + 32970 0.66 0.978684
Target:  5'- uGCUGCcaccCGGCGCU-GACCAAguGCGc -3'
miRNA:   3'- -CGACGa---GCUGUGGuUUGGUUguCGUa -5'
22950 5' -51.5 NC_005137.2 + 16766 0.66 0.976166
Target:  5'- aGCuUGCUgaCGGCACCGcguuuGCCAACAcGCu- -3'
miRNA:   3'- -CG-ACGA--GCUGUGGUu----UGGUUGU-CGua -5'
22950 5' -51.5 NC_005137.2 + 98191 0.66 0.976166
Target:  5'- cGCUGCUgGAC-CC--GCUcGCAGCGc -3'
miRNA:   3'- -CGACGAgCUGuGGuuUGGuUGUCGUa -5'
22950 5' -51.5 NC_005137.2 + 33265 0.66 0.974279
Target:  5'- uGCUGCUcauguccaucaauugCGGCggcguaggucugaACCuAACCGGCGGCAa -3'
miRNA:   3'- -CGACGA---------------GCUG-------------UGGuUUGGUUGUCGUa -5'
22950 5' -51.5 NC_005137.2 + 7793 0.66 0.973438
Target:  5'- --aGCUUGAUaaaaggGCCAAACCAcuauauaaaGCAGCGc -3'
miRNA:   3'- cgaCGAGCUG------UGGUUUGGU---------UGUCGUa -5'
22950 5' -51.5 NC_005137.2 + 31424 0.66 0.973438
Target:  5'- aGCUGCacgUCGACGCC--GCUAAUGuGCAa -3'
miRNA:   3'- -CGACG---AGCUGUGGuuUGGUUGU-CGUa -5'
22950 5' -51.5 NC_005137.2 + 86287 0.66 0.970489
Target:  5'- aGCUGCUaaacuuggaagCGGCACCAcAACCuaaaaaAGCAa -3'
miRNA:   3'- -CGACGA-----------GCUGUGGU-UUGGuug---UCGUa -5'
22950 5' -51.5 NC_005137.2 + 110805 0.66 0.967314
Target:  5'- cGCUuucGCaaUCGACGCCGcccGCCGACGcGCAa -3'
miRNA:   3'- -CGA---CG--AGCUGUGGUu--UGGUUGU-CGUa -5'
22950 5' -51.5 NC_005137.2 + 48928 0.66 0.967314
Target:  5'- cGCUGUgCGGCGCCGcguCCAACGaucGCGc -3'
miRNA:   3'- -CGACGaGCUGUGGUuu-GGUUGU---CGUa -5'
22950 5' -51.5 NC_005137.2 + 49470 0.67 0.956355
Target:  5'- -aUGCUgGuCACCAAAaauuuCCAACAGCu- -3'
miRNA:   3'- cgACGAgCuGUGGUUU-----GGUUGUCGua -5'
22950 5' -51.5 NC_005137.2 + 39824 0.68 0.938196
Target:  5'- uGCUGUUcaccggaaagugCGGCGCCGcuuAGCCuGGCAGCAa -3'
miRNA:   3'- -CGACGA------------GCUGUGGU---UUGG-UUGUCGUa -5'
22950 5' -51.5 NC_005137.2 + 123212 0.68 0.932999
Target:  5'- gGCUGCgcgccgCGAC-CUcGACCGGCGGCc- -3'
miRNA:   3'- -CGACGa-----GCUGuGGuUUGGUUGUCGua -5'
22950 5' -51.5 NC_005137.2 + 115122 0.68 0.930845
Target:  5'- cCUGUguccaaauucgggCGGCACguGACCGGCGGCAc -3'
miRNA:   3'- cGACGa------------GCUGUGguUUGGUUGUCGUa -5'
22950 5' -51.5 NC_005137.2 + 109532 0.68 0.926972
Target:  5'- uGCUGCUCGucgugcuGCACCAAcuGCUuuAUGGCAUu -3'
miRNA:   3'- -CGACGAGC-------UGUGGUU--UGGu-UGUCGUA- -5'
22950 5' -51.5 NC_005137.2 + 127628 0.69 0.915801
Target:  5'- aCUGCUgaGugGCCGGcacguuGCCAGCAGCu- -3'
miRNA:   3'- cGACGAg-CugUGGUU------UGGUUGUCGua -5'
22950 5' -51.5 NC_005137.2 + 125057 0.69 0.915801
Target:  5'- gGCgGCgCGGCGCCGGAUCugAACGGCGc -3'
miRNA:   3'- -CGaCGaGCUGUGGUUUGG--UUGUCGUa -5'
22950 5' -51.5 NC_005137.2 + 78046 0.69 0.896212
Target:  5'- gGUUGCaCGACGCUuuuuACCGAgGGCAUg -3'
miRNA:   3'- -CGACGaGCUGUGGuu--UGGUUgUCGUA- -5'
22950 5' -51.5 NC_005137.2 + 98520 0.7 0.874308
Target:  5'- --cGCgaCGGCGCCAAACCGGCgcacaAGCGUg -3'
miRNA:   3'- cgaCGa-GCUGUGGUUUGGUUG-----UCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.