Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22950 | 5' | -51.5 | NC_005137.2 | + | 109532 | 0.68 | 0.926972 |
|
Target: 5'- uGCUGCUCGucgugcuGCACCAAcuGCUuuAUGGCAUu -3' miRNA: 3'- -CGACGAGC-------UGUGGUU--UGGu-UGUCGUA- -5' |
|||||||
| 22950 | 5' | -51.5 | NC_005137.2 | + | 110805 | 0.66 | 0.967314 |
|
Target: 5'- cGCUuucGCaaUCGACGCCGcccGCCGACGcGCAa -3' miRNA: 3'- -CGA---CG--AGCUGUGGUu--UGGUUGU-CGUa -5' |
|||||||
| 22950 | 5' | -51.5 | NC_005137.2 | + | 115122 | 0.68 | 0.930845 |
|
Target: 5'- cCUGUguccaaauucgggCGGCACguGACCGGCGGCAc -3' miRNA: 3'- cGACGa------------GCUGUGguUUGGUUGUCGUa -5' |
|||||||
| 22950 | 5' | -51.5 | NC_005137.2 | + | 123212 | 0.68 | 0.932999 |
|
Target: 5'- gGCUGCgcgccgCGAC-CUcGACCGGCGGCc- -3' miRNA: 3'- -CGACGa-----GCUGuGGuUUGGUUGUCGua -5' |
|||||||
| 22950 | 5' | -51.5 | NC_005137.2 | + | 125057 | 0.69 | 0.915801 |
|
Target: 5'- gGCgGCgCGGCGCCGGAUCugAACGGCGc -3' miRNA: 3'- -CGaCGaGCUGUGGUUUGG--UUGUCGUa -5' |
|||||||
| 22950 | 5' | -51.5 | NC_005137.2 | + | 127628 | 0.69 | 0.915801 |
|
Target: 5'- aCUGCUgaGugGCCGGcacguuGCCAGCAGCu- -3' miRNA: 3'- cGACGAg-CugUGGUU------UGGUUGUCGua -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home