miRNA display CGI


Results 1 - 20 of 186 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 5' -59 NC_005137.2 + 1874 0.66 0.762721
Target:  5'- aCACCAaaGCAGacuggcccaCCGU---UGCCGCCg -3'
miRNA:   3'- gGUGGUggCGUC---------GGCGuuuGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 2162 0.68 0.635292
Target:  5'- gUCugCGCCGCAGCgUGCAcgaGCUGUg -3'
miRNA:   3'- -GGugGUGGCGUCG-GCGUuugCGGCGg -5'
22959 5' -59 NC_005137.2 + 2642 0.67 0.685327
Target:  5'- aCCAgCACCau-GCCGCAcGCGgCGCa -3'
miRNA:   3'- -GGUgGUGGcguCGGCGUuUGCgGCGg -5'
22959 5' -59 NC_005137.2 + 3633 0.67 0.714904
Target:  5'- uCCGCCACaauGuCGGCCGCGcuGAgGuuGCg -3'
miRNA:   3'- -GGUGGUGg--C-GUCGGCGU--UUgCggCGg -5'
22959 5' -59 NC_005137.2 + 6550 0.66 0.790142
Target:  5'- gUCAUCGCCGguCAGuucacauucaaCCGCcgaucuGAACGCCGUCg -3'
miRNA:   3'- -GGUGGUGGC--GUC-----------GGCG------UUUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 11847 0.67 0.699191
Target:  5'- aCAUCACCGCgaucagacacauggaAacGCCGaAAAUGCUGCCa -3'
miRNA:   3'- gGUGGUGGCG---------------U--CGGCgUUUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 12083 0.67 0.714904
Target:  5'- gUCGCCgACCGCAagUGCGAguuGCGCUGCa -3'
miRNA:   3'- -GGUGG-UGGCGUcgGCGUU---UGCGGCGg -5'
22959 5' -59 NC_005137.2 + 13348 0.68 0.675372
Target:  5'- gCCACaacgugACCGUgguaaAGCCGCAAcuucuugacuACGCUGCg -3'
miRNA:   3'- -GGUGg-----UGGCG-----UCGGCGUU----------UGCGGCGg -5'
22959 5' -59 NC_005137.2 + 13708 0.66 0.747671
Target:  5'- gCGCgACCGCGuuguugcuauuuuuuGCCGacaaagaAGACGCCGUg -3'
miRNA:   3'- gGUGgUGGCGU---------------CGGCg------UUUGCGGCGg -5'
22959 5' -59 NC_005137.2 + 14320 0.66 0.771985
Target:  5'- uCUACaaGCUGCuGCUGCu--CGUCGCCg -3'
miRNA:   3'- -GGUGg-UGGCGuCGGCGuuuGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 16497 0.71 0.460432
Target:  5'- uUCACCAgcggacaucCCGUAGCguuguUGCGAACGUCGUCg -3'
miRNA:   3'- -GGUGGU---------GGCGUCG-----GCGUUUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 17804 0.71 0.497519
Target:  5'- --uUUACUGCGuCCGCAAACGCCGUg -3'
miRNA:   3'- gguGGUGGCGUcGGCGUUUGCGGCGg -5'
22959 5' -59 NC_005137.2 + 18399 0.67 0.682345
Target:  5'- gCGgCGCCGCAGUCGaacGACGCgcacacagcaacacCGCCu -3'
miRNA:   3'- gGUgGUGGCGUCGGCgu-UUGCG--------------GCGG- -5'
22959 5' -59 NC_005137.2 + 18554 0.66 0.781128
Target:  5'- aCgAUUACCGCAucguGuuGCGAccGCGCCGUUu -3'
miRNA:   3'- -GgUGGUGGCGU----CggCGUU--UGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 19822 0.71 0.488117
Target:  5'- gCCGCCAa-GCAacGCCGCGAcacaaagccucCGCCGCCc -3'
miRNA:   3'- -GGUGGUggCGU--CGGCGUUu----------GCGGCGG- -5'
22959 5' -59 NC_005137.2 + 20961 0.69 0.585187
Target:  5'- uCUGCUGCCuGCGGCgCGCGuuuUGCCGCg -3'
miRNA:   3'- -GGUGGUGG-CGUCG-GCGUuu-GCGGCGg -5'
22959 5' -59 NC_005137.2 + 21112 0.77 0.221638
Target:  5'- aCGCgCGCCGCAGgCaGCAGACGCCaGUCg -3'
miRNA:   3'- gGUG-GUGGCGUCgG-CGUUUGCGG-CGG- -5'
22959 5' -59 NC_005137.2 + 21397 0.66 0.753346
Target:  5'- gCACCguuuuggugACaGCGGcCCGC-AGCGUCGCCc -3'
miRNA:   3'- gGUGG---------UGgCGUC-GGCGuUUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 23564 0.66 0.790142
Target:  5'- aCAgCGauuguguugaGCAGCCGUuGACGuuGCCa -3'
miRNA:   3'- gGUgGUgg--------CGUCGGCGuUUGCggCGG- -5'
22959 5' -59 NC_005137.2 + 24336 0.71 0.488117
Target:  5'- aCACaaCACUGCAcGCCGUuuGCGUCGCg -3'
miRNA:   3'- gGUG--GUGGCGU-CGGCGuuUGCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.