miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22962 3' -62.9 NC_005137.2 + 110546 0.66 0.587591
Target:  5'- gUUGGagGUGCccgccgauGUGCGCCCGCaCCU-GCGu -3'
miRNA:   3'- -AGCCa-UACG--------CGCGCGGGCG-GGAgCGC- -5'
22962 3' -62.9 NC_005137.2 + 64501 0.66 0.587591
Target:  5'- gUCGGUGUGCaUGUgaacuaguugGCCUguGCCCUCGgGc -3'
miRNA:   3'- -AGCCAUACGcGCG----------CGGG--CGGGAGCgC- -5'
22962 3' -62.9 NC_005137.2 + 116107 0.66 0.577854
Target:  5'- uUUGGUGUGCGCGgacaaaauacaGgCgGCCaCUCGCa -3'
miRNA:   3'- -AGCCAUACGCGCg----------CgGgCGG-GAGCGc -5'
22962 3' -62.9 NC_005137.2 + 120111 0.66 0.568152
Target:  5'- gUCGGUAagcguugcuUGCGCGUGUggCUGCCaaCUUGCa -3'
miRNA:   3'- -AGCCAU---------ACGCGCGCG--GGCGG--GAGCGc -5'
22962 3' -62.9 NC_005137.2 + 96420 0.67 0.539318
Target:  5'- cCGcgcgGCGaCGCGCCCGCCgCgUUGCGu -3'
miRNA:   3'- aGCcauaCGC-GCGCGGGCGG-G-AGCGC- -5'
22962 3' -62.9 NC_005137.2 + 20710 0.67 0.539318
Target:  5'- cUCGGUAcGCGUGCGCUuUGUgaaaCUCGCa -3'
miRNA:   3'- -AGCCAUaCGCGCGCGG-GCGg---GAGCGc -5'
22962 3' -62.9 NC_005137.2 + 38829 0.67 0.533609
Target:  5'- gCGGgcaaaaaauuuuuuuUGUGCcgcaacGCGCGCCUGCCCa-GCGu -3'
miRNA:   3'- aGCC---------------AUACG------CGCGCGGGCGGGagCGC- -5'
22962 3' -62.9 NC_005137.2 + 59791 0.67 0.510998
Target:  5'- aCGGUGggguUGCGCGCGUaaa-UCUCGCGa -3'
miRNA:   3'- aGCCAU----ACGCGCGCGggcgGGAGCGC- -5'
22962 3' -62.9 NC_005137.2 + 96546 0.67 0.505406
Target:  5'- gCGGUcgGCGCG-GCUCcauauuuuuauguugGCCCcgUCGCGg -3'
miRNA:   3'- aGCCAuaCGCGCgCGGG---------------CGGG--AGCGC- -5'
22962 3' -62.9 NC_005137.2 + 110699 0.67 0.492464
Target:  5'- aUCGGgucAUGCGCGCGUgCGCaacggugugCGCGc -3'
miRNA:   3'- -AGCCa--UACGCGCGCGgGCGgga------GCGC- -5'
22962 3' -62.9 NC_005137.2 + 78731 0.68 0.483314
Target:  5'- uUCGGcgauaaGUGCGCG-GUCUGCCCgggCGCc -3'
miRNA:   3'- -AGCCa-----UACGCGCgCGGGCGGGa--GCGc -5'
22962 3' -62.9 NC_005137.2 + 72951 0.68 0.456373
Target:  5'- aCGGca-GCGCGCG-CCGCCaaCGCGu -3'
miRNA:   3'- aGCCauaCGCGCGCgGGCGGgaGCGC- -5'
22962 3' -62.9 NC_005137.2 + 119836 0.69 0.421753
Target:  5'- gCuGUGUGCGCGCGCCgUGCCUguuUCGa- -3'
miRNA:   3'- aGcCAUACGCGCGCGG-GCGGG---AGCgc -5'
22962 3' -62.9 NC_005137.2 + 67703 0.69 0.39685
Target:  5'- cCGcUcgGCGCGCGUuuGUgccgCCUCGCGg -3'
miRNA:   3'- aGCcAuaCGCGCGCGggCG----GGAGCGC- -5'
22962 3' -62.9 NC_005137.2 + 97995 0.72 0.268504
Target:  5'- gCGGcGUGgGUGCGCCCGCCaa-GUGg -3'
miRNA:   3'- aGCCaUACgCGCGCGGGCGGgagCGC- -5'
22962 3' -62.9 NC_005137.2 + 42509 0.72 0.262454
Target:  5'- gCGGUAUaGCGCGCuaaucgcucGCCCGCCCgaaUCgGCa -3'
miRNA:   3'- aGCCAUA-CGCGCG---------CGGGCGGG---AG-CGc -5'
22962 3' -62.9 NC_005137.2 + 116870 0.78 0.112701
Target:  5'- gCGGUGUGCGCauGUGCgCUGCCC-CGCGa -3'
miRNA:   3'- aGCCAUACGCG--CGCG-GGCGGGaGCGC- -5'
22962 3' -62.9 NC_005137.2 + 108164 1.08 0.000769
Target:  5'- gUCGGUAUGCGCGCGCCCGCCCUCGCGu -3'
miRNA:   3'- -AGCCAUACGCGCGCGGGCGGGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.