miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22970 5' -51.6 NC_005137.2 + 131033 0.66 0.974297
Target:  5'- cGGCGCGUCcgcGGCguACAAuucaGGCGCGGGc -3'
miRNA:   3'- cUCGUGCAGa--CCG--UGUU----UCGCGUUUc -5'
22970 5' -51.6 NC_005137.2 + 122539 0.66 0.974297
Target:  5'- cGGGCACGUUaucGGCGCGucgcaauuGCGUAAGc -3'
miRNA:   3'- -CUCGUGCAGa--CCGUGUuu------CGCGUUUc -5'
22970 5' -51.6 NC_005137.2 + 100133 0.66 0.971422
Target:  5'- -cGUGCGcugCUGGCGCAcgaagAGGCGCGcGGc -3'
miRNA:   3'- cuCGUGCa--GACCGUGU-----UUCGCGUuUC- -5'
22970 5' -51.6 NC_005137.2 + 31363 0.66 0.968322
Target:  5'- -uGCGCGaccgCUGGUACAAGG-GCGAc- -3'
miRNA:   3'- cuCGUGCa---GACCGUGUUUCgCGUUuc -5'
22970 5' -51.6 NC_005137.2 + 62925 0.66 0.968322
Target:  5'- cGGGCGCuuccauUUUGGCACAuuauuuuGCGCAAAu -3'
miRNA:   3'- -CUCGUGc-----AGACCGUGUuu-----CGCGUUUc -5'
22970 5' -51.6 NC_005137.2 + 56745 0.67 0.963591
Target:  5'- cGAGCACGUCgcccgucgcgucgGGUcccAUAAcGGCGCAAAa -3'
miRNA:   3'- -CUCGUGCAGa------------CCG---UGUU-UCGCGUUUc -5'
22970 5' -51.6 NC_005137.2 + 125050 0.67 0.960302
Target:  5'- gGAGC-CGggcGGCGCGGcgccggaucugaacGGCGCAAAGg -3'
miRNA:   3'- -CUCGuGCagaCCGUGUU--------------UCGCGUUUC- -5'
22970 5' -51.6 NC_005137.2 + 97485 0.67 0.957211
Target:  5'- gGAGCGCGUUgcgucuuUGaGCGC-AAGCGCcAAGc -3'
miRNA:   3'- -CUCGUGCAG-------AC-CGUGuUUCGCGuUUC- -5'
22970 5' -51.6 NC_005137.2 + 77585 0.67 0.953542
Target:  5'- -cGCGCGUCUGGCu----GCGUAc-- -3'
miRNA:   3'- cuCGUGCAGACCGuguuuCGCGUuuc -5'
22970 5' -51.6 NC_005137.2 + 2584 0.67 0.953542
Target:  5'- cGGGCACGUC-GGC-CAccGCGUGAc- -3'
miRNA:   3'- -CUCGUGCAGaCCGuGUuuCGCGUUuc -5'
22970 5' -51.6 NC_005137.2 + 95799 0.67 0.953542
Target:  5'- -uGCcCGUC-GGCGCAcGGCGCAc-- -3'
miRNA:   3'- cuCGuGCAGaCCGUGUuUCGCGUuuc -5'
22970 5' -51.6 NC_005137.2 + 98027 0.68 0.934699
Target:  5'- -uGCACGUCgGGCGCugcGAGCGgGu-- -3'
miRNA:   3'- cuCGUGCAGaCCGUGu--UUCGCgUuuc -5'
22970 5' -51.6 NC_005137.2 + 80727 0.68 0.929328
Target:  5'- -uGCGCGUUgGGCACcgugGAAGCGCu--- -3'
miRNA:   3'- cuCGUGCAGaCCGUG----UUUCGCGuuuc -5'
22970 5' -51.6 NC_005137.2 + 123499 0.68 0.929328
Target:  5'- aAGUuCGUCgGGCGCGGuuGGCGCAGc- -3'
miRNA:   3'- cUCGuGCAGaCCGUGUU--UCGCGUUuc -5'
22970 5' -51.6 NC_005137.2 + 96568 0.68 0.92369
Target:  5'- cGGGCGCGUCgccGCGCGGguagcggucGGCGCGGc- -3'
miRNA:   3'- -CUCGUGCAGac-CGUGUU---------UCGCGUUuc -5'
22970 5' -51.6 NC_005137.2 + 97417 0.69 0.90518
Target:  5'- uGGGCACGUacaccgGGCGC--GGCGCAc-- -3'
miRNA:   3'- -CUCGUGCAga----CCGUGuuUCGCGUuuc -5'
22970 5' -51.6 NC_005137.2 + 93771 0.69 0.898484
Target:  5'- uGAGCACGUacagggacCUGGUggACGAuacuGGCGCAacGAGg -3'
miRNA:   3'- -CUCGUGCA--------GACCG--UGUU----UCGCGU--UUC- -5'
22970 5' -51.6 NC_005137.2 + 49069 0.69 0.884321
Target:  5'- cGAGCGCacugCgGGCGCAAaaaacAGCGCAAAc -3'
miRNA:   3'- -CUCGUGca--GaCCGUGUU-----UCGCGUUUc -5'
22970 5' -51.6 NC_005137.2 + 66050 0.7 0.876864
Target:  5'- uGGCACGUC-GGCACGuuGGCGguAu- -3'
miRNA:   3'- cUCGUGCAGaCCGUGUu-UCGCguUuc -5'
22970 5' -51.6 NC_005137.2 + 130394 0.7 0.853052
Target:  5'- cGGCACGUUUGGCGgCGGAG-GCGGu- -3'
miRNA:   3'- cUCGUGCAGACCGU-GUUUCgCGUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.