miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23040 3' -56.4 NC_005178.1 + 30197 0.65 0.537427
Target:  5'- cGCuUGUUgaGGGAGCCGaucaUcacuggacggaacuGACCGGCAGCGa -3'
miRNA:   3'- -CG-ACGG--UCUUCGGC----A--------------UUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 8004 0.66 0.529742
Target:  5'- gGCUGCCGG-GGCUGacccugacACCGGCAuCGa -3'
miRNA:   3'- -CGACGGUCuUCGGCau------UGGCCGUcGU- -5'
23040 3' -56.4 NC_005178.1 + 35443 0.66 0.529742
Target:  5'- cGCUGaCCGGGcgccaagguaAGCCGUAcccgcCCGGcCAGUu -3'
miRNA:   3'- -CGAC-GGUCU----------UCGGCAUu----GGCC-GUCGu -5'
23040 3' -56.4 NC_005178.1 + 12643 0.66 0.529742
Target:  5'- cGCU-CCAGGcGGCCGUcgAugCGuuGCAGCAg -3'
miRNA:   3'- -CGAcGGUCU-UCGGCA--UugGC--CGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 17589 0.66 0.529742
Target:  5'- uGCUGCCAGAucgGGUCGUc-CCaGCGGa- -3'
miRNA:   3'- -CGACGGUCU---UCGGCAuuGGcCGUCgu -5'
23040 3' -56.4 NC_005178.1 + 10350 0.66 0.528647
Target:  5'- cGC-GCCGGGcugcgcuGGCCG-AGCUggugGGCAGCGa -3'
miRNA:   3'- -CGaCGGUCU-------UCGGCaUUGG----CCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 29502 0.66 0.518834
Target:  5'- gGCUGC----GGCCGauauGCgGGCAGCAg -3'
miRNA:   3'- -CGACGgucuUCGGCau--UGgCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 15950 0.66 0.518834
Target:  5'- uGCgGCCGGuGGUCGaaGGCCuGCGGCAa -3'
miRNA:   3'- -CGaCGGUCuUCGGCa-UUGGcCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 6912 0.66 0.518834
Target:  5'- aGCUGCUcGccGCUgagGUGGCCcGCAGCAg -3'
miRNA:   3'- -CGACGGuCuuCGG---CAUUGGcCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 16646 0.66 0.518834
Target:  5'- aGCuUGaCCAGggGCgGUAAUgacguugccaUGGCGGCc -3'
miRNA:   3'- -CG-AC-GGUCuuCGgCAUUG----------GCCGUCGu -5'
23040 3' -56.4 NC_005178.1 + 21695 0.66 0.517748
Target:  5'- aGCUcGuCCGGGAGCUgagccgccgaGUAACCGGCcaucuucgccuggGGCGg -3'
miRNA:   3'- -CGA-C-GGUCUUCGG----------CAUUGGCCG-------------UCGU- -5'
23040 3' -56.4 NC_005178.1 + 9461 0.66 0.517748
Target:  5'- uCUGCCGGAcGUgGUGGuCCGGUacugaugAGCAg -3'
miRNA:   3'- cGACGGUCUuCGgCAUU-GGCCG-------UCGU- -5'
23040 3' -56.4 NC_005178.1 + 23549 0.66 0.508016
Target:  5'- -gUGCCuuGAgcAGCCG--GCCGaGCAGCGg -3'
miRNA:   3'- cgACGGu-CU--UCGGCauUGGC-CGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 20106 0.66 0.508016
Target:  5'- cGC-GCCAuucGAAGUCcaggaaacGGCCGGCAGCGg -3'
miRNA:   3'- -CGaCGGU---CUUCGGca------UUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 31491 0.66 0.497294
Target:  5'- aGCaGCUGGAuaucaGGCCa-GAUCGGCAGCGc -3'
miRNA:   3'- -CGaCGGUCU-----UCGGcaUUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 22267 0.66 0.497294
Target:  5'- --cGCCAGGcuGGCCc--GCCaGGCGGCGg -3'
miRNA:   3'- cgaCGGUCU--UCGGcauUGG-CCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 6952 0.66 0.49091
Target:  5'- --aGCCGGcgaggcaaucggcauGAGCCGUucGACCG-CAGCAc -3'
miRNA:   3'- cgaCGGUC---------------UUCGGCA--UUGGCcGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 10593 0.67 0.476165
Target:  5'- --gGCCgAGcGAGCCGgcACCG-CAGCAa -3'
miRNA:   3'- cgaCGG-UC-UUCGGCauUGGCcGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 17945 0.67 0.476165
Target:  5'- cGCUGgcguaccggguCCAGGAGCaCGUccugGACCucgccgagGGCGGCAg -3'
miRNA:   3'- -CGAC-----------GGUCUUCG-GCA----UUGG--------CCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 14293 0.67 0.465769
Target:  5'- cUUGCCAGAcgcGGCCcuuGCCGGC-GCc -3'
miRNA:   3'- cGACGGUCU---UCGGcauUGGCCGuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.