miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23196 3' -60.9 NC_005259.1 + 6580 0.67 0.403974
Target:  5'- gCCGCCUcggacaaaugGCUCGACUAcCGGaucacCCCGUc -3'
miRNA:   3'- -GGCGGA----------CGAGCUGGU-GCCgu---GGGCAu -5'
23196 3' -60.9 NC_005259.1 + 6935 0.7 0.273624
Target:  5'- gCCGCCUugaggccgaGCUCGccGCCgACGGCAUCCa-- -3'
miRNA:   3'- -GGCGGA---------CGAGC--UGG-UGCCGUGGGcau -5'
23196 3' -60.9 NC_005259.1 + 8148 0.67 0.403974
Target:  5'- gCGCCcucguUGCUCuGGCCAUGGCcugaggcuaccCCCGUGg -3'
miRNA:   3'- gGCGG-----ACGAG-CUGGUGCCGu----------GGGCAU- -5'
23196 3' -60.9 NC_005259.1 + 8356 0.68 0.353758
Target:  5'- gCUGCCgguaucGCUCGGCgGCGGC-CUCGg- -3'
miRNA:   3'- -GGCGGa-----CGAGCUGgUGCCGuGGGCau -5'
23196 3' -60.9 NC_005259.1 + 8869 0.68 0.38674
Target:  5'- gCCGCCUGC-CGcacCCACGcCGCCUGa- -3'
miRNA:   3'- -GGCGGACGaGCu--GGUGCcGUGGGCau -5'
23196 3' -60.9 NC_005259.1 + 11226 0.66 0.516638
Target:  5'- aCGCCgcaguccucggGCUCGGgcaUCGCGcGCACCaCGUGg -3'
miRNA:   3'- gGCGGa----------CGAGCU---GGUGC-CGUGG-GCAU- -5'
23196 3' -60.9 NC_005259.1 + 12509 0.69 0.308115
Target:  5'- -aGCC-GCUgGGCCGCucGGCuACCCGUAg -3'
miRNA:   3'- ggCGGaCGAgCUGGUG--CCG-UGGGCAU- -5'
23196 3' -60.9 NC_005259.1 + 15312 0.72 0.198441
Target:  5'- gCCGCCcacgGuCUCGACgGCGGUACUgGUAa -3'
miRNA:   3'- -GGCGGa---C-GAGCUGgUGCCGUGGgCAU- -5'
23196 3' -60.9 NC_005259.1 + 20494 0.66 0.487142
Target:  5'- aCCGCCcgGCagcucaUCGGCgACGGUGuCCCGa- -3'
miRNA:   3'- -GGCGGa-CG------AGCUGgUGCCGU-GGGCau -5'
23196 3' -60.9 NC_005259.1 + 20804 0.67 0.421685
Target:  5'- gCCaCCUGCUCGuCCcgucGCGGCGCaCCa-- -3'
miRNA:   3'- -GGcGGACGAGCuGG----UGCCGUG-GGcau -5'
23196 3' -60.9 NC_005259.1 + 28275 0.66 0.487142
Target:  5'- aCCGUCgGCUCugccgauguaGGCCACGGUgccGCCCu-- -3'
miRNA:   3'- -GGCGGaCGAG----------CUGGUGCCG---UGGGcau -5'
23196 3' -60.9 NC_005259.1 + 28963 0.67 0.439856
Target:  5'- aUCGCCgaggucggUGCcgaGGCCGCGaGCGCCCGc- -3'
miRNA:   3'- -GGCGG--------ACGag-CUGGUGC-CGUGGGCau -5'
23196 3' -60.9 NC_005259.1 + 33112 0.68 0.361814
Target:  5'- gUGCCUGUagGGCCacGCGGCAgCCGc- -3'
miRNA:   3'- gGCGGACGagCUGG--UGCCGUgGGCau -5'
23196 3' -60.9 NC_005259.1 + 35885 0.67 0.421685
Target:  5'- gCCGCCgagGCa-GACCACGGCGagCCa-- -3'
miRNA:   3'- -GGCGGa--CGagCUGGUGCCGUg-GGcau -5'
23196 3' -60.9 NC_005259.1 + 36703 0.7 0.289779
Target:  5'- cCCGCCgaugagcucgugccGCUCGAcCCGCcGCGCCCGc- -3'
miRNA:   3'- -GGCGGa-------------CGAGCU-GGUGcCGUGGGCau -5'
23196 3' -60.9 NC_005259.1 + 37214 0.66 0.477486
Target:  5'- aCCGCCgccGC-CG-CCGgGGCgcugGCCCGUGc -3'
miRNA:   3'- -GGCGGa--CGaGCuGGUgCCG----UGGGCAU- -5'
23196 3' -60.9 NC_005259.1 + 37277 0.67 0.421685
Target:  5'- gCCGCCcgGCagGACUugcaugGCGGUGCCCGc- -3'
miRNA:   3'- -GGCGGa-CGagCUGG------UGCCGUGGGCau -5'
23196 3' -60.9 NC_005259.1 + 40850 0.7 0.293933
Target:  5'- aUGcCCUGCgccUCGACCAUGGcCGCCCa-- -3'
miRNA:   3'- gGC-GGACG---AGCUGGUGCC-GUGGGcau -5'
23196 3' -60.9 NC_005259.1 + 43268 0.7 0.273624
Target:  5'- gUGCCUGagagUUGACCGCaGCGCCCGc- -3'
miRNA:   3'- gGCGGACg---AGCUGGUGcCGUGGGCau -5'
23196 3' -60.9 NC_005259.1 + 43842 0.74 0.145678
Target:  5'- gCCGCC-GCUCG-CCAUGccgagcGCACCCGUGa -3'
miRNA:   3'- -GGCGGaCGAGCuGGUGC------CGUGGGCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.