miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 735 0.68 0.272651
Target:  5'- aCACCGGCgguGCCUA-CGC-CGCCGGUGc -3'
miRNA:   3'- cGUGGUCG---CGGGUcGUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 2216 0.78 0.053601
Target:  5'- cGCACCgAGCGCCCGGCcucgccauuugucgGCGacaGCCGGUa -3'
miRNA:   3'- -CGUGG-UCGCGGGUCG--------------UGCg--CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 4531 0.67 0.328859
Target:  5'- gGCACCccggucgauuGUGCCCAGUGCGgGCacgaGGUc -3'
miRNA:   3'- -CGUGGu---------CGCGGGUCGUGCgCGg---CCAc -5'
23202 5' -62.8 NC_005259.1 + 4652 0.66 0.410487
Target:  5'- cGCACC-GCGCCU---ACGgGCaCGGUGu -3'
miRNA:   3'- -CGUGGuCGCGGGucgUGCgCG-GCCAC- -5'
23202 5' -62.8 NC_005259.1 + 5471 0.67 0.352831
Target:  5'- aGCACCaauggccggugcaauAGCGCCgAGCgaggaucgagcuacGCGCGCCGc-- -3'
miRNA:   3'- -CGUGG---------------UCGCGGgUCG--------------UGCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 6443 0.74 0.11813
Target:  5'- gGCACCGucGCGCUgauCGGCAgCGuCGCCGGUGc -3'
miRNA:   3'- -CGUGGU--CGCGG---GUCGU-GC-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 7178 0.71 0.170101
Target:  5'- gGCACCGGCgaguGCCCGGCcugcggACGCaCCGGg- -3'
miRNA:   3'- -CGUGGUCG----CGGGUCG------UGCGcGGCCac -5'
23202 5' -62.8 NC_005259.1 + 8574 0.67 0.360018
Target:  5'- aGCACCGccacCGCCCAcGCACGauCCGGc- -3'
miRNA:   3'- -CGUGGUc---GCGGGU-CGUGCgcGGCCac -5'
23202 5' -62.8 NC_005259.1 + 9631 0.67 0.341079
Target:  5'- cGCGCCGGUGCCCucgaucaccuCGuCGUCGGUa -3'
miRNA:   3'- -CGUGGUCGCGGGucgu------GC-GCGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 9807 0.7 0.208287
Target:  5'- cGCGCCAcuacCGCCC-GCAC-CGCCGGg- -3'
miRNA:   3'- -CGUGGUc---GCGGGuCGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 10127 0.66 0.39318
Target:  5'- cGCAUCA--GCCCAcGCGCGCGCCc--- -3'
miRNA:   3'- -CGUGGUcgCGGGU-CGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 11011 0.66 0.401774
Target:  5'- cGCGCCGgacGCGCCgaGGCAgGaguuCGCCgGGUGg -3'
miRNA:   3'- -CGUGGU---CGCGGg-UCGUgC----GCGG-CCAC- -5'
23202 5' -62.8 NC_005259.1 + 12213 0.72 0.165794
Target:  5'- uGCACCGGCGCaCC-GCcCGCugGCCGGg- -3'
miRNA:   3'- -CGUGGUCGCG-GGuCGuGCG--CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 13441 0.71 0.183628
Target:  5'- cGCGCUAgGCGUgaccgUCGGCGCgGCGCUGGUGc -3'
miRNA:   3'- -CGUGGU-CGCG-----GGUCGUG-CGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 17770 0.68 0.297636
Target:  5'- cGCGCCGG-GCCgAGCgcaccgagcguGCGCaccgcgauagcgagGCCGGUGa -3'
miRNA:   3'- -CGUGGUCgCGGgUCG-----------UGCG--------------CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 17904 0.66 0.401774
Target:  5'- cGCGCCgaugcguguGGaUGCCCGGUcuggacCGCGCCcGGUGu -3'
miRNA:   3'- -CGUGG---------UC-GCGGGUCGu-----GCGCGG-CCAC- -5'
23202 5' -62.8 NC_005259.1 + 18723 0.66 0.376353
Target:  5'- uCAUCGGgcCGCCCGGCAUcgguaaGuCGUCGGUGg -3'
miRNA:   3'- cGUGGUC--GCGGGUCGUG------C-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 18852 0.66 0.375524
Target:  5'- uCGCCGGUGCCguGCaacgguuGCGCGCgUGGg- -3'
miRNA:   3'- cGUGGUCGCGGguCG-------UGCGCG-GCCac -5'
23202 5' -62.8 NC_005259.1 + 19851 0.67 0.344185
Target:  5'- cGCGCUcgguguGGCGCUC-GCGCcCGCCGGg- -3'
miRNA:   3'- -CGUGG------UCGCGGGuCGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 20246 0.66 0.384705
Target:  5'- cGCACCcuGUGCgaCAcGC-CGCGCCGGg- -3'
miRNA:   3'- -CGUGGu-CGCGg-GU-CGuGCGCGGCCac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.