miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23284 5' -59.5 NC_005259.1 + 65279 0.66 0.556728
Target:  5'- uGUGUGGGuGcUGCCGuGGaucuucggcaaGgUCAUCGAg -3'
miRNA:   3'- -CACACCC-C-ACGGCuCCg----------CgAGUAGCU- -5'
23284 5' -59.5 NC_005259.1 + 58674 0.66 0.536102
Target:  5'- ---cGGGGUGCagcuuccaucgCGGGGUcgGCUCGUCGc -3'
miRNA:   3'- cacaCCCCACG-----------GCUCCG--CGAGUAGCu -5'
23284 5' -59.5 NC_005259.1 + 67425 0.66 0.536102
Target:  5'- ---cGGGGUGCCGGGcucaCGCUugagcgCGUCGGg -3'
miRNA:   3'- cacaCCCCACGGCUCc---GCGA------GUAGCU- -5'
23284 5' -59.5 NC_005259.1 + 55035 0.68 0.401594
Target:  5'- ---cGGGcUGCCGAGGUGCUUGccUCGGu -3'
miRNA:   3'- cacaCCCcACGGCUCCGCGAGU--AGCU- -5'
23284 5' -59.5 NC_005259.1 + 26828 0.71 0.290559
Target:  5'- ---cGGuGGUGCCGGGGCGgUCugcUCGGg -3'
miRNA:   3'- cacaCC-CCACGGCUCCGCgAGu--AGCU- -5'
23284 5' -59.5 NC_005259.1 + 27997 0.71 0.276813
Target:  5'- -gGUGcGGGUGCCGGGGCGgggUCGcCGGg -3'
miRNA:   3'- caCAC-CCCACGGCUCCGCg--AGUaGCU- -5'
23284 5' -59.5 NC_005259.1 + 41636 0.75 0.158126
Target:  5'- -gGUGGcGGUGCCGgucugcGGGCGCUCggUGAg -3'
miRNA:   3'- caCACC-CCACGGC------UCCGCGAGuaGCU- -5'
23284 5' -59.5 NC_005259.1 + 24745 1.08 0.000579
Target:  5'- gGUGUGGGGUGCCGAGGCGCUCAUCGAa -3'
miRNA:   3'- -CACACCCCACGGCUCCGCGAGUAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.