miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23333 5' -51 NC_005259.1 + 24243 0.66 0.947217
Target:  5'- aGGCACGcgaguUCGGCGAgugCGUGCaCGcgUGGCu -3'
miRNA:   3'- -UCGUGU-----AGUUGCUa--GUACG-GCa-GCUG- -5'
23333 5' -51 NC_005259.1 + 42162 0.66 0.947217
Target:  5'- uGCACG-CGACGAgCA-GCaCGUCGAa -3'
miRNA:   3'- uCGUGUaGUUGCUaGUaCG-GCAGCUg -5'
23333 5' -51 NC_005259.1 + 7337 0.66 0.947217
Target:  5'- gAGUACGUCGaggccggacagACGuUCGUGCUGU-GGCa -3'
miRNA:   3'- -UCGUGUAGU-----------UGCuAGUACGGCAgCUG- -5'
23333 5' -51 NC_005259.1 + 53618 0.66 0.947217
Target:  5'- cAGCagGCGUCgAGCGG---UGCCGUUGGCc -3'
miRNA:   3'- -UCG--UGUAG-UUGCUaguACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 19483 0.66 0.942344
Target:  5'- cAGUuCGUCAACGAUC-UGCCGaC-ACa -3'
miRNA:   3'- -UCGuGUAGUUGCUAGuACGGCaGcUG- -5'
23333 5' -51 NC_005259.1 + 65106 0.66 0.926018
Target:  5'- uGGCACgGUCAguGCG-UCA--CCGUCGGCg -3'
miRNA:   3'- -UCGUG-UAGU--UGCuAGUacGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 17070 0.66 0.926018
Target:  5'- cGCGCAUUuguGCG-UCAgGCCGcCGAUa -3'
miRNA:   3'- uCGUGUAGu--UGCuAGUaCGGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 22138 0.66 0.926018
Target:  5'- cAGcCACGUCGGC-AUCGUGCgCGcCGAa -3'
miRNA:   3'- -UC-GUGUAGUUGcUAGUACG-GCaGCUg -5'
23333 5' -51 NC_005259.1 + 21062 0.66 0.926018
Target:  5'- cGC-CAUCGuguggACGcgUAUGCCGcugUCGACg -3'
miRNA:   3'- uCGuGUAGU-----UGCuaGUACGGC---AGCUG- -5'
23333 5' -51 NC_005259.1 + 35800 0.66 0.926018
Target:  5'- cGCGCcUCAACagGAcgGUGCCGUaCGACc -3'
miRNA:   3'- uCGUGuAGUUG--CUagUACGGCA-GCUG- -5'
23333 5' -51 NC_005259.1 + 13669 0.67 0.920003
Target:  5'- -cUACAUCGACGGU-GUGCuCGUgGACc -3'
miRNA:   3'- ucGUGUAGUUGCUAgUACG-GCAgCUG- -5'
23333 5' -51 NC_005259.1 + 34723 0.67 0.909784
Target:  5'- gAGCGCcucgucggggaaaccGUUggUGAUCGUGCgccaauuggcauCGUCGGCg -3'
miRNA:   3'- -UCGUG---------------UAGuuGCUAGUACG------------GCAGCUG- -5'
23333 5' -51 NC_005259.1 + 36412 0.67 0.909784
Target:  5'- gAGCGCcUCAAgGGUCAUggucugcgcagcgucGCCGaggUCGACc -3'
miRNA:   3'- -UCGUGuAGUUgCUAGUA---------------CGGC---AGCUG- -5'
23333 5' -51 NC_005259.1 + 40172 0.67 0.907116
Target:  5'- cGGCAgcUCGACcGUCAcaGCCGUUGACc -3'
miRNA:   3'- -UCGUguAGUUGcUAGUa-CGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 67156 0.67 0.907116
Target:  5'- cGCuuGUCGAUGGUggcggcCAUGCCGcCGAUg -3'
miRNA:   3'- uCGugUAGUUGCUA------GUACGGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 66229 0.67 0.900248
Target:  5'- cGCACAc--GCGGUCGUGCagccaUCGACg -3'
miRNA:   3'- uCGUGUaguUGCUAGUACGgc---AGCUG- -5'
23333 5' -51 NC_005259.1 + 64940 0.67 0.895993
Target:  5'- cAGCGCgaggguggccggguuGUCGAUGGUCAUGCa--CGGCa -3'
miRNA:   3'- -UCGUG---------------UAGUUGCUAGUACGgcaGCUG- -5'
23333 5' -51 NC_005259.1 + 7397 0.67 0.893101
Target:  5'- cGCGagacCcgCAACGGcauccUCGUcGCCGUCGGCg -3'
miRNA:   3'- uCGU----GuaGUUGCU-----AGUA-CGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 62844 0.67 0.893101
Target:  5'- gAGCGCgcgGUUGACGAgCA-GCCGcUCGGCg -3'
miRNA:   3'- -UCGUG---UAGUUGCUaGUaCGGC-AGCUG- -5'
23333 5' -51 NC_005259.1 + 38237 0.67 0.893101
Target:  5'- cGUGgAUCAGCGAUgGUGCCGccuUUGAa -3'
miRNA:   3'- uCGUgUAGUUGCUAgUACGGC---AGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.