miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 7507 0.66 0.688873
Target:  5'- uGUCGGGCGGGaGaCCCGC-CAcCACa -3'
miRNA:   3'- gCGGCCCGUUCaC-GGGUGuGUaGUGg -5'
23335 5' -57.3 NC_005259.1 + 44103 0.66 0.688873
Target:  5'- aCGUCGacCAucUGCUCGCGCAUCGCCu -3'
miRNA:   3'- -GCGGCccGUucACGGGUGUGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 16333 0.66 0.688873
Target:  5'- uGCCcgauGCAcGGaUGCCCGCACAagACCg -3'
miRNA:   3'- gCGGcc--CGU-UC-ACGGGUGUGUagUGG- -5'
23335 5' -57.3 NC_005259.1 + 29902 0.66 0.678298
Target:  5'- aGCacaaGGGguGGcUGCCCgagaccaucgACGCGUgGCCg -3'
miRNA:   3'- gCGg---CCCguUC-ACGGG----------UGUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 19535 0.66 0.678298
Target:  5'- cCGCCGuGCAGGccgacgcguaUGCCCGCAgcCGUCgggacagcGCCg -3'
miRNA:   3'- -GCGGCcCGUUC----------ACGGGUGU--GUAG--------UGG- -5'
23335 5' -57.3 NC_005259.1 + 26914 0.66 0.678298
Target:  5'- gGCCGGGUuucuUGCCCucguggaucucgGCAUA-CGCCg -3'
miRNA:   3'- gCGGCCCGuuc-ACGGG------------UGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 20527 0.66 0.678298
Target:  5'- aGCaCGGGUgcGcUGCCCGCAgCGUgguggaucagCACCg -3'
miRNA:   3'- gCG-GCCCGuuC-ACGGGUGU-GUA----------GUGG- -5'
23335 5' -57.3 NC_005259.1 + 28389 0.66 0.678298
Target:  5'- -aCCGGacgacaguguGUAGGUGCCCGCGCG-CAUg -3'
miRNA:   3'- gcGGCC----------CGUUCACGGGUGUGUaGUGg -5'
23335 5' -57.3 NC_005259.1 + 49108 0.66 0.667681
Target:  5'- cCGCCGGGaucuCAAGa---CGCugAUCACCg -3'
miRNA:   3'- -GCGGCCC----GUUCacggGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 50370 0.66 0.667681
Target:  5'- uGCUcGGCGAGaaacucgGCCCACGUGUCGCg -3'
miRNA:   3'- gCGGcCCGUUCa------CGGGUGUGUAGUGg -5'
23335 5' -57.3 NC_005259.1 + 34066 0.66 0.667681
Target:  5'- cCGaCCacGGCGgcGGUGUCCACACGUagGCCc -3'
miRNA:   3'- -GC-GGc-CCGU--UCACGGGUGUGUAg-UGG- -5'
23335 5' -57.3 NC_005259.1 + 3862 0.66 0.658099
Target:  5'- aCGCCGGuCGAGcgccucgaGCCCACcccgcagcgcgacauCGUCGCCa -3'
miRNA:   3'- -GCGGCCcGUUCa-------CGGGUGu--------------GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 23425 0.66 0.657033
Target:  5'- uGgCGGcGCAAGcaGCCCGC-CAcCGCCa -3'
miRNA:   3'- gCgGCC-CGUUCa-CGGGUGuGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 31528 0.66 0.657033
Target:  5'- -aUCGGGguGGUGCCgugAUAgAUCGCCu -3'
miRNA:   3'- gcGGCCCguUCACGGg--UGUgUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 4510 0.66 0.657033
Target:  5'- gCGCCGGG--AGUgGCgCUGCGCggCACCc -3'
miRNA:   3'- -GCGGCCCguUCA-CG-GGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 58724 0.66 0.657033
Target:  5'- uCGCCGGG--GGUGUCgUugGCAccggCACCg -3'
miRNA:   3'- -GCGGCCCguUCACGG-GugUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 24816 0.66 0.657033
Target:  5'- uGCCccGGCAcgccGUGCCCGCACcg-ACCa -3'
miRNA:   3'- gCGGc-CCGUu---CACGGGUGUGuagUGG- -5'
23335 5' -57.3 NC_005259.1 + 23473 0.66 0.657033
Target:  5'- gGCCucGGCAuugucGGUGCCgACGcCAUgACCa -3'
miRNA:   3'- gCGGc-CCGU-----UCACGGgUGU-GUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 8290 0.66 0.646364
Target:  5'- uGCgCGGGCA----CCCGCACGgaaaCGCCg -3'
miRNA:   3'- gCG-GCCCGUucacGGGUGUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 750 0.66 0.646364
Target:  5'- aCGCC--GCcGGUGCCUAcCGCGUcCACCg -3'
miRNA:   3'- -GCGGccCGuUCACGGGU-GUGUA-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.