miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23483 3' -53.3 NC_005259.1 + 45976 0.66 0.887593
Target:  5'- aGCUugG-CGAGuGUGuCCGCGUAcaUCUGCg -3'
miRNA:   3'- -CGAugCaGCUC-CGU-GGUGCAU--AGGUG- -5'
23483 3' -53.3 NC_005259.1 + 55250 0.66 0.887593
Target:  5'- cCUAUGUCGGGGU-CCACc---CCACg -3'
miRNA:   3'- cGAUGCAGCUCCGuGGUGcauaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 16146 0.66 0.880154
Target:  5'- uGC-ACGaCGAGGUugUG-GUGUCCACu -3'
miRNA:   3'- -CGaUGCaGCUCCGugGUgCAUAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 63444 0.66 0.880154
Target:  5'- gGCgagACaUCGAGGCccauggccaACCGCGUGaUCGCg -3'
miRNA:   3'- -CGa--UGcAGCUCCG---------UGGUGCAUaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 20343 0.66 0.872464
Target:  5'- cCUAUGgCGGgcGGUACUACGcGUCCACc -3'
miRNA:   3'- cGAUGCaGCU--CCGUGGUGCaUAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 48405 0.66 0.872464
Target:  5'- cGCccgcCGUCGAGuCACCGCGaccgCCACc -3'
miRNA:   3'- -CGau--GCAGCUCcGUGGUGCaua-GGUG- -5'
23483 3' -53.3 NC_005259.1 + 9683 0.66 0.872464
Target:  5'- cGCUGCcgGUCGAGGuCGCCGC----UCACu -3'
miRNA:   3'- -CGAUG--CAGCUCC-GUGGUGcauaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 27531 0.66 0.853851
Target:  5'- cGC--CGUCGAGGCcCCACGgcgggauguugcggCCACc -3'
miRNA:   3'- -CGauGCAGCUCCGuGGUGCaua-----------GGUG- -5'
23483 3' -53.3 NC_005259.1 + 42271 0.66 0.847941
Target:  5'- --cACGUCGAGGC-CCuuGacAUCCAUg -3'
miRNA:   3'- cgaUGCAGCUCCGuGGugCa-UAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 5424 0.66 0.847941
Target:  5'- cGCcACGUCGAGGUcugcGCC-CGcugCCGCc -3'
miRNA:   3'- -CGaUGCAGCUCCG----UGGuGCauaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 8472 0.67 0.83046
Target:  5'- aGCUGCa-CGA-GCACCGCGcUGUCgGCa -3'
miRNA:   3'- -CGAUGcaGCUcCGUGGUGC-AUAGgUG- -5'
23483 3' -53.3 NC_005259.1 + 1844 0.67 0.82049
Target:  5'- cGCUGCcGcCGAGGCcgagaaagccgccGCCGCGU-UCCGu -3'
miRNA:   3'- -CGAUG-CaGCUCCG-------------UGGUGCAuAGGUg -5'
23483 3' -53.3 NC_005259.1 + 62946 0.67 0.812155
Target:  5'- cGCUGCuGcCG-GGCACCGC-UGUCCuCg -3'
miRNA:   3'- -CGAUG-CaGCuCCGUGGUGcAUAGGuG- -5'
23483 3' -53.3 NC_005259.1 + 67124 0.67 0.812155
Target:  5'- cGCUGCGgucgugCGuGaGCACCGCuGUGagCCGCu -3'
miRNA:   3'- -CGAUGCa-----GCuC-CGUGGUG-CAUa-GGUG- -5'
23483 3' -53.3 NC_005259.1 + 50903 0.67 0.812155
Target:  5'- cGCUGCGUgCGAuaGCGCCGCaugagCCGCa -3'
miRNA:   3'- -CGAUGCA-GCUc-CGUGGUGcaua-GGUG- -5'
23483 3' -53.3 NC_005259.1 + 24857 0.67 0.808401
Target:  5'- cGCUACGcCGAGGC-CCGCcucgcucugaCCGCu -3'
miRNA:   3'- -CGAUGCaGCUCCGuGGUGcaua------GGUG- -5'
23483 3' -53.3 NC_005259.1 + 53023 0.67 0.802716
Target:  5'- uGCggugGCGUCGAGGCAUCGUGaccUCGCg -3'
miRNA:   3'- -CGa---UGCAGCUCCGUGGUGCauaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 36861 0.67 0.802716
Target:  5'- cGCUGCGcCGuugcuGGCACCGC----CCGCg -3'
miRNA:   3'- -CGAUGCaGCu----CCGUGGUGcauaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 37980 0.68 0.783321
Target:  5'- -gUGCGUCGuacuGCGCCuGCGUGcccuUCCACa -3'
miRNA:   3'- cgAUGCAGCuc--CGUGG-UGCAU----AGGUG- -5'
23483 3' -53.3 NC_005259.1 + 3315 0.69 0.742755
Target:  5'- cGCUGCGUCGAcgugagcgccgGGCAgcuCUGCGUGcUCgGCa -3'
miRNA:   3'- -CGAUGCAGCU-----------CCGU---GGUGCAU-AGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.