miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 110832 0.66 0.556209
Target:  5'- cCGCGGACGaguuuccgcUGcCCGCCCUGGcgaacaGCCgCGc -3'
miRNA:   3'- -GUGCCUGC---------ACcGGCGGGACC------UGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 30544 0.66 0.556209
Target:  5'- --aGGACGaggaagaGGCCGCCgCcgccgGGGCCUCGg -3'
miRNA:   3'- gugCCUGCa------CCGGCGG-Ga----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 82646 0.66 0.556209
Target:  5'- gCAUGGGCGacGCCGCCgC-GGACUgCGg -3'
miRNA:   3'- -GUGCCUGCacCGGCGG-GaCCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 20192 0.66 0.546749
Target:  5'- aGCaGGCGaagcggGGCCGCCaaaGGCCCCGc -3'
miRNA:   3'- gUGcCUGCa-----CCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 65462 0.66 0.546749
Target:  5'- aCGCGuGCGcGGCCGCCgugCUGGGCaugcggCCCGc -3'
miRNA:   3'- -GUGCcUGCaCCGGCGG---GACCUG------GGGC- -5'
23559 5' -64.2 NC_005261.1 + 98566 0.66 0.546749
Target:  5'- gGCGGGC--GGCCGUCCUccgcGGGCUCgGg -3'
miRNA:   3'- gUGCCUGcaCCGGCGGGA----CCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 36476 0.66 0.546749
Target:  5'- gGCGGGCGUGcaccuggaGCUGCCgaGcgaGGCCCUGa -3'
miRNA:   3'- gUGCCUGCAC--------CGGCGGgaC---CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 68732 0.66 0.546749
Target:  5'- gGCGGGCGccGGCgggaagaagCGCCCgccgGGGCgCCGc -3'
miRNA:   3'- gUGCCUGCa-CCG---------GCGGGa---CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 72243 0.66 0.546749
Target:  5'- gGCGGACcugGUGGCCGUUggGGACCg-- -3'
miRNA:   3'- gUGCCUG---CACCGGCGGgaCCUGGggc -5'
23559 5' -64.2 NC_005261.1 + 19087 0.66 0.546749
Target:  5'- gCGCGGGCGgauccgagaUGGCCGCgCC-GcGGCCgCGg -3'
miRNA:   3'- -GUGCCUGC---------ACCGGCG-GGaC-CUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 29912 0.66 0.546749
Target:  5'- uCGCGGagcacGCGgcGGCCGUCUgGGACCCg- -3'
miRNA:   3'- -GUGCC-----UGCa-CCGGCGGGaCCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 61421 0.66 0.545806
Target:  5'- uCGCaGGACcUGGCCucgcugaccaugcGCCUgcagacGGACCCCGu -3'
miRNA:   3'- -GUG-CCUGcACCGG-------------CGGGa-----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 76750 0.66 0.545806
Target:  5'- uCGCGGACGUGGCgcaccccgCGUUCUucggcgcGGAcgcCCCCGc -3'
miRNA:   3'- -GUGCCUGCACCG--------GCGGGA-------CCU---GGGGC- -5'
23559 5' -64.2 NC_005261.1 + 69608 0.66 0.541099
Target:  5'- uCGCGGGCG-GGCgcgcauccucccccaCGCCgUcGGCCCCGc -3'
miRNA:   3'- -GUGCCUGCaCCG---------------GCGGgAcCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 138027 0.66 0.537342
Target:  5'- cCAgGGGCGgcGGCgGCaCCgcuGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCa-CCGgCG-GGac-CUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 34722 0.66 0.537342
Target:  5'- cCGCGGACGccGCCGUCC-GcGGCgCCGa -3'
miRNA:   3'- -GUGCCUGCacCGGCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 34077 0.66 0.537342
Target:  5'- cCGCGGACGgcgcggUGGCCGaCCUGGcggCCGa -3'
miRNA:   3'- -GUGCCUGC------ACCGGCgGGACCuggGGC- -5'
23559 5' -64.2 NC_005261.1 + 94159 0.66 0.537342
Target:  5'- cCACGGACGcccGGaaggCGUCCUGGAUcugcugCCCGc -3'
miRNA:   3'- -GUGCCUGCa--CCg---GCGGGACCUG------GGGC- -5'
23559 5' -64.2 NC_005261.1 + 36779 0.66 0.537342
Target:  5'- gGCGG-CGcuggGGCCaGCgCUGGACCgCGc -3'
miRNA:   3'- gUGCCuGCa---CCGG-CGgGACCUGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 40572 0.66 0.537342
Target:  5'- cCGCGGACGccGGCCcCCCaggUGcGGCaCCCGc -3'
miRNA:   3'- -GUGCCUGCa-CCGGcGGG---AC-CUG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.