miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 3' -59.5 NC_005262.1 + 11092 0.68 0.432317
Target:  5'- gCGgCCCGCUgGcacgcuuGGCG-GGGCAAUGg -3'
miRNA:   3'- -GCgGGGCGAgCuu-----CCGUgCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 4585 0.7 0.312541
Target:  5'- gGCgCUGCUCGGgcgugagcgcccgcAGGaACGGGCGGUGa -3'
miRNA:   3'- gCGgGGCGAGCU--------------UCCgUGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 57744 0.69 0.337805
Target:  5'- uCGUCaaggCGCUCGAGGGCauuGCGcGCAAUGg -3'
miRNA:   3'- -GCGGg---GCGAGCUUCCG---UGCcCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 55016 0.69 0.345748
Target:  5'- -aCCUCGCgcacgCGGucGGCGCGGGCAAg- -3'
miRNA:   3'- gcGGGGCGa----GCUu-CCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 30256 0.68 0.396172
Target:  5'- aGCCa-GCUCGAcgaccugaacaAGGCcgaGCGGGCAAUc -3'
miRNA:   3'- gCGGggCGAGCU-----------UCCG---UGCCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 974 0.68 0.404134
Target:  5'- aGCCCCuGC-CGAguggcgaccugcgGGGCG-GGGCGGUGu -3'
miRNA:   3'- gCGGGG-CGaGCU-------------UCCGUgCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 11627 0.68 0.405025
Target:  5'- uGCCCCcugcaccaucgGCUCGgcGGCGCcGGCGu-- -3'
miRNA:   3'- gCGGGG-----------CGAGCuuCCGUGcCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 54023 0.68 0.420358
Target:  5'- gGCaaCCUGCUCGccuacagcaccaucGAGcGCACGGGCGAc- -3'
miRNA:   3'- gCG--GGGCGAGC--------------UUC-CGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 8904 0.68 0.4231
Target:  5'- aCGgUCCGCUCuuGGGUGCGcGGCGAa- -3'
miRNA:   3'- -GCgGGGCGAGcuUCCGUGC-CCGUUac -5'
23862 3' -59.5 NC_005262.1 + 33930 0.7 0.307369
Target:  5'- uGCCgaGCUCGcggcGGGCACGcGGCAAg- -3'
miRNA:   3'- gCGGggCGAGCu---UCCGUGC-CCGUUac -5'
23862 3' -59.5 NC_005262.1 + 49410 0.7 0.292956
Target:  5'- uGgUCUGUUCGgcGGCAUGGGCGAc- -3'
miRNA:   3'- gCgGGGCGAGCuuCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 10843 0.71 0.285256
Target:  5'- cCGCCgCGCUCaGggGGCggcaugagugaggGCGcGGUAAUGg -3'
miRNA:   3'- -GCGGgGCGAG-CuuCCG-------------UGC-CCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 51197 0.76 0.1252
Target:  5'- gCGgCCCGCUgGAGccGCGCGGGCGAUGc -3'
miRNA:   3'- -GCgGGGCGAgCUUc-CGUGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 43978 0.75 0.147043
Target:  5'- gGCUCUGCgcgUGAucGCGCGGGCGAUGg -3'
miRNA:   3'- gCGGGGCGa--GCUucCGUGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 37875 0.75 0.155065
Target:  5'- uCGgCgCGCcCGGAGGCACGGGCGGg- -3'
miRNA:   3'- -GCgGgGCGaGCUUCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 42256 0.73 0.211972
Target:  5'- gCGCCgCGCUcacugcggcgaCGAGcGGCACGGGCAccGg -3'
miRNA:   3'- -GCGGgGCGA-----------GCUU-CCGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 5176 0.72 0.228766
Target:  5'- aCGgCCgGCgUCGcGGGCGCGGGCGcgGc -3'
miRNA:   3'- -GCgGGgCG-AGCuUCCGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 45970 0.71 0.252894
Target:  5'- -uUCCCGCUCGAGGGUugGGaCGAc- -3'
miRNA:   3'- gcGGGGCGAGCUUCCGugCCcGUUac -5'
23862 3' -59.5 NC_005262.1 + 48463 0.71 0.271667
Target:  5'- uGCCgCGCggaucgCGAgccgcguGGGCACGGGCGGc- -3'
miRNA:   3'- gCGGgGCGa-----GCU-------UCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 56929 0.71 0.271667
Target:  5'- gGCCgCGCUCGAgaAGcgcacgccgauccGCGCGGGCGAg- -3'
miRNA:   3'- gCGGgGCGAGCU--UC-------------CGUGCCCGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.