miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 24538 0.66 0.401042
Target:  5'- gGCaACGGCgg-CGGCGCgGGCGgcGGCGGc -3'
miRNA:   3'- -UG-UGCUGaugGCCGUGgCCGC--CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 20795 0.66 0.401042
Target:  5'- gGCGcCGACgcaAUgGGUcaaguuccugGCCGGCGcGGCAGg -3'
miRNA:   3'- -UGU-GCUGa--UGgCCG----------UGGCCGC-CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 21626 0.66 0.401042
Target:  5'- gAUugGA--GCgCGGCGCCGGaauGGGCGa -3'
miRNA:   3'- -UGugCUgaUG-GCCGUGGCCg--CCCGUc -5'
24110 3' -61.1 NC_005263.2 + 18560 0.66 0.392185
Target:  5'- cGCGCaGC--CCGGCACCGGUGGcGUc- -3'
miRNA:   3'- -UGUGcUGauGGCCGUGGCCGCC-CGuc -5'
24110 3' -61.1 NC_005263.2 + 19685 0.66 0.392185
Target:  5'- cCGCGACguucacgcgcgUGCCGGCGCCuccGgGGGUAu -3'
miRNA:   3'- uGUGCUG-----------AUGGCCGUGGc--CgCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 31255 0.66 0.392185
Target:  5'- cGCGCGGCg--CGGCGCC---GGGCAGg -3'
miRNA:   3'- -UGUGCUGaugGCCGUGGccgCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 24312 0.66 0.392185
Target:  5'- -gACGGCcGCCGGCACgGGCaucGCAa -3'
miRNA:   3'- ugUGCUGaUGGCCGUGgCCGcc-CGUc -5'
24110 3' -61.1 NC_005263.2 + 21108 0.66 0.383457
Target:  5'- -gGCGACgagcCCGGCGCa-GCGGGUg- -3'
miRNA:   3'- ugUGCUGau--GGCCGUGgcCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 28141 0.66 0.374858
Target:  5'- uGCACG-CUGCCaGCGCCGagcacGCGaGCAGc -3'
miRNA:   3'- -UGUGCuGAUGGcCGUGGC-----CGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 8816 0.66 0.374858
Target:  5'- cAUGCGcCUGCCGGcCGCuCGGCGuGCGa -3'
miRNA:   3'- -UGUGCuGAUGGCC-GUG-GCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 11756 0.66 0.366392
Target:  5'- gACGCGAC-ACCuGGCgACCacuCGGGCGGu -3'
miRNA:   3'- -UGUGCUGaUGG-CCG-UGGcc-GCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 6246 0.66 0.366392
Target:  5'- uCGCGGCcagGCgCGGUcguGCCGuCGGGCAGc -3'
miRNA:   3'- uGUGCUGa--UG-GCCG---UGGCcGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 32857 0.66 0.358058
Target:  5'- gACACGucaaACgaguUCGauGUGCCGGCGGGCGGc -3'
miRNA:   3'- -UGUGC----UGau--GGC--CGUGGCCGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 30355 0.66 0.358058
Target:  5'- aGCGCGGCcgcgcugccGCCGGCGCCGaGUGcgagccccaugcGGCGGc -3'
miRNA:   3'- -UGUGCUGa--------UGGCCGUGGC-CGC------------CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 32003 0.67 0.349857
Target:  5'- --uCGGCUGCCGuaGCUGcGCGGGUg- -3'
miRNA:   3'- uguGCUGAUGGCcgUGGC-CGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 24676 0.67 0.349857
Target:  5'- uACACGAUcgggggcGCCGGUAaCGGCGGcGCGc -3'
miRNA:   3'- -UGUGCUGa------UGGCCGUgGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 22189 0.67 0.341791
Target:  5'- -gGCGA--ACCGGUGCUGGCGuGGCc- -3'
miRNA:   3'- ugUGCUgaUGGCCGUGGCCGC-CCGuc -5'
24110 3' -61.1 NC_005263.2 + 29204 0.67 0.341791
Target:  5'- cGCuCGACgcagGCCGGCGCguauuugccguCGGCGcGCAGc -3'
miRNA:   3'- -UGuGCUGa---UGGCCGUG-----------GCCGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 35635 0.67 0.333075
Target:  5'- uGCGCG-CcGCCGGUAucguguuCCGcGCGGGCGa -3'
miRNA:   3'- -UGUGCuGaUGGCCGU-------GGC-CGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 6766 0.67 0.326839
Target:  5'- -uGCGAUcguuucgagaucguaAUCGGUgacGCCGGCGGGCGGc -3'
miRNA:   3'- ugUGCUGa--------------UGGCCG---UGGCCGCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.