miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 897 0.7 0.214007
Target:  5'- aGCGCGGCggUCGcCGCCGGCGGGUu- -3'
miRNA:   3'- -UGUGCUGauGGCcGUGGCCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 1338 0.7 0.223532
Target:  5'- aACACGAUcacgGCCGGUugcagaaucuuuuuGCCGGC-GGCGGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 1932 0.77 0.063063
Target:  5'- uGCACGAgCgcGCCGGCACCGGCGacgccGGCAa -3'
miRNA:   3'- -UGUGCU-Ga-UGGCCGUGGCCGC-----CCGUc -5'
24110 3' -61.1 NC_005263.2 + 2378 0.69 0.22872
Target:  5'- gACGCGGCguaacccaugaCGGCGCCGGCGGucGCu- -3'
miRNA:   3'- -UGUGCUGaug--------GCCGUGGCCGCC--CGuc -5'
24110 3' -61.1 NC_005263.2 + 2668 0.69 0.258121
Target:  5'- -gGCGAC-ACCGGCagccugcagugucgcGCCGGC-GGCGGc -3'
miRNA:   3'- ugUGCUGaUGGCCG---------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 3193 0.68 0.282147
Target:  5'- aGCACGAg-GCCGGUgaGCCGGCccGGCGc -3'
miRNA:   3'- -UGUGCUgaUGGCCG--UGGCCGc-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 3338 0.7 0.219567
Target:  5'- uGCGCG-CcGCCGGCGCCGcGCGcGGUc- -3'
miRNA:   3'- -UGUGCuGaUGGCCGUGGC-CGC-CCGuc -5'
24110 3' -61.1 NC_005263.2 + 4652 0.67 0.318407
Target:  5'- uCAUGGCgACgGGCagGCCGGCGcGCGGg -3'
miRNA:   3'- uGUGCUGaUGgCCG--UGGCCGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 5028 0.69 0.236991
Target:  5'- cGCuCGACaGCCGGC-CCGGCGGcCGa -3'
miRNA:   3'- -UGuGCUGaUGGCCGuGGCCGCCcGUc -5'
24110 3' -61.1 NC_005263.2 + 5226 0.69 0.236392
Target:  5'- cGCGCGGCacGCCauugacgcgaucaGGCGCCGucaucaGCGGGCGGu -3'
miRNA:   3'- -UGUGCUGa-UGG-------------CCGUGGC------CGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 6246 0.66 0.366392
Target:  5'- uCGCGGCcagGCgCGGUcguGCCGuCGGGCAGc -3'
miRNA:   3'- uGUGCUGa--UG-GCCG---UGGCcGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 6766 0.67 0.326839
Target:  5'- -uGCGAUcguuucgagaucguaAUCGGUgacGCCGGCGGGCGGc -3'
miRNA:   3'- ugUGCUGa--------------UGGCCG---UGGCCGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 8816 0.66 0.374858
Target:  5'- cAUGCGcCUGCCGGcCGCuCGGCGuGCGa -3'
miRNA:   3'- -UGUGCuGAUGGCC-GUG-GCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 8876 0.68 0.28702
Target:  5'- uACGCGgcccguGCUGCCGGUgcagcgcgcgcaauACUGGC-GGCAGg -3'
miRNA:   3'- -UGUGC------UGAUGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 9477 0.7 0.219567
Target:  5'- gACGCGGCUucauucgcGCCGGCGCUauccaucgcguGcGCGGGCuGa -3'
miRNA:   3'- -UGUGCUGA--------UGGCCGUGG-----------C-CGCCCGuC- -5'
24110 3' -61.1 NC_005263.2 + 10154 0.74 0.116123
Target:  5'- gGCGCGGCaucgGCCGGUugcgcaccggcuGCCGGCGGcGCGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG------------UGGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 10868 0.72 0.160485
Target:  5'- uCGCGGCggaACuCGGCACCGGCGcGCGu -3'
miRNA:   3'- uGUGCUGa--UG-GCCGUGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 11756 0.66 0.366392
Target:  5'- gACGCGAC-ACCuGGCgACCacuCGGGCGGu -3'
miRNA:   3'- -UGUGCUGaUGG-CCG-UGGcc-GCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 14161 0.68 0.2753
Target:  5'- -gGCGACUucggGCCGGCgGCCGGUGuGCGc -3'
miRNA:   3'- ugUGCUGA----UGGCCG-UGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 15381 0.68 0.2753
Target:  5'- aGCGCGuACguugcAUUGGCGauccgcaCGGCGGGCAGc -3'
miRNA:   3'- -UGUGC-UGa----UGGCCGUg------GCCGCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.