miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 5' -56.6 NC_005263.2 + 43046 0.66 0.589018
Target:  5'- uGUUUgGCgcgACGCCGAcgucggccaauagUCGGCCGCc -3'
miRNA:   3'- -UAGGgCGaaaUGCGGCU-------------AGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 15342 0.66 0.579055
Target:  5'- --aUCGaCUUUGCGUCGGUCGcauugcGCCGCGc -3'
miRNA:   3'- uagGGC-GAAAUGCGGCUAGU------CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 37716 0.66 0.579055
Target:  5'- -aCCCGCU---CGCCGGcCGGCCcgGCGc -3'
miRNA:   3'- uaGGGCGAaauGCGGCUaGUCGG--CGU- -5'
24117 5' -56.6 NC_005263.2 + 17741 0.66 0.579055
Target:  5'- -gCUCGCacucgGCGCCGGcggcagcgCGGCCGCGc -3'
miRNA:   3'- uaGGGCGaaa--UGCGGCUa-------GUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 18581 0.66 0.566927
Target:  5'- cGUCCCggccacuGCUggcGCGCCGA-CGgacGCCGCAg -3'
miRNA:   3'- -UAGGG-------CGAaa-UGCGGCUaGU---CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 3225 0.66 0.557053
Target:  5'- -gCCCGCcccgaugACGCCGggCAGCaucuGCAc -3'
miRNA:   3'- uaGGGCGaaa----UGCGGCuaGUCGg---CGU- -5'
24117 5' -56.6 NC_005263.2 + 18443 0.66 0.557053
Target:  5'- --aCCGCUcgaggUGCGCgUGAagCAGCCGCGc -3'
miRNA:   3'- uagGGCGAa----AUGCG-GCUa-GUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 19053 0.66 0.546141
Target:  5'- -cCCCGaggacGCGCCGcgCGGCCuGCGc -3'
miRNA:   3'- uaGGGCgaaa-UGCGGCuaGUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 31715 0.66 0.535298
Target:  5'- -aCCCGCg--AUGCCGGccagcuucaUCAGgCCGCc -3'
miRNA:   3'- uaGGGCGaaaUGCGGCU---------AGUC-GGCGu -5'
24117 5' -56.6 NC_005263.2 + 38176 0.66 0.535298
Target:  5'- uUCgCGUUcgACGCUGAUCcAGCUGCc -3'
miRNA:   3'- uAGgGCGAaaUGCGGCUAG-UCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 32659 0.66 0.535298
Target:  5'- cUUCCGgaUgGCGCgGGUCGGCgGCGa -3'
miRNA:   3'- uAGGGCgaAaUGCGgCUAGUCGgCGU- -5'
24117 5' -56.6 NC_005263.2 + 16486 0.66 0.535298
Target:  5'- --aCgGCgcUGCGCCGcgCGGCCGUc -3'
miRNA:   3'- uagGgCGaaAUGCGGCuaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 9415 0.67 0.513849
Target:  5'- uAUCgCgGCUgcgGCGCUG-UUAGCCGCGc -3'
miRNA:   3'- -UAG-GgCGAaa-UGCGGCuAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 44631 0.67 0.492759
Target:  5'- -aCUCGCUgcgGCaGCUGAUCgAGCUGCGc -3'
miRNA:   3'- uaGGGCGAaa-UG-CGGCUAG-UCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 38929 0.67 0.492759
Target:  5'- -aCCCGCgucgcuucGCGCUGAUCGGCaCGg- -3'
miRNA:   3'- uaGGGCGaaa-----UGCGGCUAGUCG-GCgu -5'
24117 5' -56.6 NC_005263.2 + 12328 0.67 0.492759
Target:  5'- -aCCUGCUcUgcuauggcACGCCGc-CAGCCGCAg -3'
miRNA:   3'- uaGGGCGAaA--------UGCGGCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 4846 0.67 0.483399
Target:  5'- -gCCCGCacagccaaucgagcgUUACGCCGAgcgcgUCAGCCaaucGCAa -3'
miRNA:   3'- uaGGGCGa--------------AAUGCGGCU-----AGUCGG----CGU- -5'
24117 5' -56.6 NC_005263.2 + 17186 0.67 0.482364
Target:  5'- -gCUCGCggcgUACGCCG-UC-GCCGCGc -3'
miRNA:   3'- uaGGGCGaa--AUGCGGCuAGuCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 30294 0.67 0.482364
Target:  5'- -gUCCGCgacaGCGCCGGgcgCGGCCgGCGu -3'
miRNA:   3'- uaGGGCGaaa-UGCGGCUa--GUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 17901 0.67 0.482364
Target:  5'- -aCCgGCggcGCGCCGAUCAGCauCAa -3'
miRNA:   3'- uaGGgCGaaaUGCGGCUAGUCGgcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.