miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 5' -56.6 NC_005263.2 + 44582 1.07 0.000758
Target:  5'- gAUCCCGCUUUACGCCGAUCAGCCGCAa -3'
miRNA:   3'- -UAGGGCGAAAUGCGGCUAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 31330 0.74 0.192874
Target:  5'- cGUCCgGCgaUACGCCGG-CGGCCGUc -3'
miRNA:   3'- -UAGGgCGaaAUGCGGCUaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 15888 0.74 0.198185
Target:  5'- -aCCCGCUgcagcuuuacACGCUGAUCucGCCGCAg -3'
miRNA:   3'- uaGGGCGAaa--------UGCGGCUAGu-CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 21914 0.73 0.220716
Target:  5'- cAUCgCGCggc-CGCCGcgCGGCCGCAg -3'
miRNA:   3'- -UAGgGCGaaauGCGGCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 22528 0.73 0.23278
Target:  5'- -gCCUGCUcgAUGCCGAgacgGGCCGCAa -3'
miRNA:   3'- uaGGGCGAaaUGCGGCUag--UCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 21777 0.72 0.251912
Target:  5'- cGUCCCGCaaccgaccUUcACGCCGAcCGGCCuGCAg -3'
miRNA:   3'- -UAGGGCG--------AAaUGCGGCUaGUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 26999 0.71 0.309247
Target:  5'- -aCCCGCU--GCGCCGGgcUCGucGCCGCc -3'
miRNA:   3'- uaGGGCGAaaUGCGGCU--AGU--CGGCGu -5'
24117 5' -56.6 NC_005263.2 + 45261 0.71 0.309247
Target:  5'- ---aCGCUgcgACGCUGAUCgaAGCCGCAu -3'
miRNA:   3'- uaggGCGAaa-UGCGGCUAG--UCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 40688 0.71 0.317075
Target:  5'- -aCCUGCUcgacGCGCCGAUCucCCGCAu -3'
miRNA:   3'- uaGGGCGAaa--UGCGGCUAGucGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 7403 0.7 0.333177
Target:  5'- --gUCGCgagUGCGCCGAacaguucgUCGGCCGCu -3'
miRNA:   3'- uagGGCGaa-AUGCGGCU--------AGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 189 0.7 0.333177
Target:  5'- -gCCCGCUgcccgUGCGCC---CGGCCGCu -3'
miRNA:   3'- uaGGGCGAa----AUGCGGcuaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 33835 0.7 0.34145
Target:  5'- uAUCCCaaugcGCgcgUUGCGCCGG-CcGCCGCAa -3'
miRNA:   3'- -UAGGG-----CGa--AAUGCGGCUaGuCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 27695 0.7 0.358438
Target:  5'- -gUgCGCgccgGCGCCGG-CGGCCGCAu -3'
miRNA:   3'- uaGgGCGaaa-UGCGGCUaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 42861 0.69 0.376008
Target:  5'- -gCCCGCUgaugacgGCGCCuGAUCGcgucaauggcguGCCGCGc -3'
miRNA:   3'- uaGGGCGAaa-----UGCGG-CUAGU------------CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 19093 0.69 0.403433
Target:  5'- --gUCGCggUGCgcaacgcacuGCCGGUCGGCCGCGc -3'
miRNA:   3'- uagGGCGaaAUG----------CGGCUAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 44768 0.68 0.422404
Target:  5'- -aCCgCGCgcgGCGCCGG-CGGCgCGCAg -3'
miRNA:   3'- uaGG-GCGaaaUGCGGCUaGUCG-GCGU- -5'
24117 5' -56.6 NC_005263.2 + 25760 0.68 0.432089
Target:  5'- -gCCCGCgugaucUGCGUCGAgaagCAGcCCGCGc -3'
miRNA:   3'- uaGGGCGaa----AUGCGGCUa---GUC-GGCGU- -5'
24117 5' -56.6 NC_005263.2 + 38563 0.68 0.432089
Target:  5'- --gCCGCga-GCGCCGcGUCGGUCGCu -3'
miRNA:   3'- uagGGCGaaaUGCGGC-UAGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 45139 0.68 0.432089
Target:  5'- cAUUCCGCUgacgggcaucACGCuCGcgCAGCUGCAg -3'
miRNA:   3'- -UAGGGCGAaa--------UGCG-GCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 26288 0.68 0.454846
Target:  5'- -gCCCGCgagaauggcuugcuCGCCGGcCAGCUGCAg -3'
miRNA:   3'- uaGGGCGaaau----------GCGGCUaGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.