miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24135 5' -53.7 NC_005263.2 + 35729 0.66 0.767316
Target:  5'- aGACGGCGAGAcgccgGAagaagcggCGCGGcgcgagacGCUUGAGg -3'
miRNA:   3'- -UUGCCGUUCUa----CUa-------GCGCC--------UGAGCUC- -5'
24135 5' -53.7 NC_005263.2 + 41671 0.66 0.767316
Target:  5'- uGGCGGC-AGAUcgucGggCGCGGACUgCGGc -3'
miRNA:   3'- -UUGCCGuUCUA----CuaGCGCCUGA-GCUc -5'
24135 5' -53.7 NC_005263.2 + 28957 0.66 0.767316
Target:  5'- uGCGGUcGGAUcgguGUCGCGGaAUUCGGGc -3'
miRNA:   3'- uUGCCGuUCUAc---UAGCGCC-UGAGCUC- -5'
24135 5' -53.7 NC_005263.2 + 44821 0.66 0.767316
Target:  5'- --aGGCAAGAaaacgGCGGACUgCGAGg -3'
miRNA:   3'- uugCCGUUCUacuagCGCCUGA-GCUC- -5'
24135 5' -53.7 NC_005263.2 + 16383 0.66 0.755766
Target:  5'- cGGCGGCcuGAUGAagcuggccggcaUCGCGGgugcgguACUCGGc -3'
miRNA:   3'- -UUGCCGuuCUACU------------AGCGCC-------UGAGCUc -5'
24135 5' -53.7 NC_005263.2 + 31022 0.66 0.746197
Target:  5'- uGCGGCGAGg----CGCGGcgugcgcuGCUCGAGc -3'
miRNA:   3'- uUGCCGUUCuacuaGCGCC--------UGAGCUC- -5'
24135 5' -53.7 NC_005263.2 + 39098 0.66 0.746197
Target:  5'- gGACGGCGAGua---CGCGcGACUCGuGc -3'
miRNA:   3'- -UUGCCGUUCuacuaGCGC-CUGAGCuC- -5'
24135 5' -53.7 NC_005263.2 + 37395 0.67 0.69037
Target:  5'- cGACGGCuGAGGUGAacccguaUCGCGGuCgCGAa -3'
miRNA:   3'- -UUGCCG-UUCUACU-------AGCGCCuGaGCUc -5'
24135 5' -53.7 NC_005263.2 + 26306 0.67 0.657835
Target:  5'- -cCGGUcu-GUGAUCGCGGGCgaugcgCGAGu -3'
miRNA:   3'- uuGCCGuucUACUAGCGCCUGa-----GCUC- -5'
24135 5' -53.7 NC_005263.2 + 8772 0.71 0.43031
Target:  5'- cGCGGCAGGAUGA-CGCcGGCccgcgCGAGg -3'
miRNA:   3'- uUGCCGUUCUACUaGCGcCUGa----GCUC- -5'
24135 5' -53.7 NC_005263.2 + 40904 0.8 0.124382
Target:  5'- -cCGGC--GAUGGUCGCGGACUCGGu -3'
miRNA:   3'- uuGCCGuuCUACUAGCGCCUGAGCUc -5'
24135 5' -53.7 NC_005263.2 + 38835 1.06 0.001974
Target:  5'- cAACGGCAAGAUGAUCGCGGACUCGAGc -3'
miRNA:   3'- -UUGCCGUUCUACUAGCGCCUGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.