miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24139 3' -55.3 NC_005263.2 + 46960 0.66 0.701397
Target:  5'- aUCGGAUacGCGGUgcaacgCCGUGcGCAGCa -3'
miRNA:   3'- cGGCCUAc-UGCCGaua---GGCAC-CGUUG- -5'
24139 3' -55.3 NC_005263.2 + 32661 0.66 0.701397
Target:  5'- uCCGGAUGGC-GCggGUCgGcGGCGAUg -3'
miRNA:   3'- cGGCCUACUGcCGa-UAGgCaCCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 24942 0.66 0.701397
Target:  5'- uGgCGGcgGACGGCggugcgcgGUUCGcagaucGGCAACa -3'
miRNA:   3'- -CgGCCuaCUGCCGa-------UAGGCa-----CCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 38133 0.66 0.668427
Target:  5'- aCCGGAcGGCGuGCgcagcCCGcagGGCAGCg -3'
miRNA:   3'- cGGCCUaCUGC-CGaua--GGCa--CCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 16947 0.66 0.657353
Target:  5'- cGuuGuGAUGACGGUUGccggCCGUacGuGCAGCg -3'
miRNA:   3'- -CggC-CUACUGCCGAUa---GGCA--C-CGUUG- -5'
24139 3' -55.3 NC_005263.2 + 24783 0.66 0.646254
Target:  5'- gGgCGGcGUcGGCGGCUcgCCGggcgucGGCGGCg -3'
miRNA:   3'- -CgGCC-UA-CUGCCGAuaGGCa-----CCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 25014 0.67 0.635143
Target:  5'- gGCUGcGGUGGCGGUggcugCgGUGGCGu- -3'
miRNA:   3'- -CGGC-CUACUGCCGaua--GgCACCGUug -5'
24139 3' -55.3 NC_005263.2 + 22591 0.67 0.624029
Target:  5'- -gCGGGUG-CGGCUucUCCGgucagGGCAcgACg -3'
miRNA:   3'- cgGCCUACuGCCGAu-AGGCa----CCGU--UG- -5'
24139 3' -55.3 NC_005263.2 + 24096 0.67 0.624029
Target:  5'- gGCCGGc-GGCGGCUAcgugCCG-GGCu-- -3'
miRNA:   3'- -CGGCCuaCUGCCGAUa---GGCaCCGuug -5'
24139 3' -55.3 NC_005263.2 + 37973 0.67 0.624029
Target:  5'- cGCCGGcUGGC-GCUGaagGUGGCGGCa -3'
miRNA:   3'- -CGGCCuACUGcCGAUaggCACCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 14081 0.67 0.612923
Target:  5'- cGCCGGcccAUGuCGGCUGguaCCGgcUGcGCGGCg -3'
miRNA:   3'- -CGGCC---UACuGCCGAUa--GGC--AC-CGUUG- -5'
24139 3' -55.3 NC_005263.2 + 22092 0.67 0.59077
Target:  5'- aCCGGcacaccaggcGUGACGGCUG-CCGccGGCAc- -3'
miRNA:   3'- cGGCC----------UACUGCCGAUaGGCa-CCGUug -5'
24139 3' -55.3 NC_005263.2 + 3916 0.68 0.546957
Target:  5'- cGCCGGGcggcaaUGGCGGCaggCCGaccGGCAGg -3'
miRNA:   3'- -CGGCCU------ACUGCCGauaGGCa--CCGUUg -5'
24139 3' -55.3 NC_005263.2 + 37723 0.68 0.536155
Target:  5'- cGCCGGccGGCccGGCg---CGUGGCGGCu -3'
miRNA:   3'- -CGGCCuaCUG--CCGauagGCACCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 44030 0.69 0.514783
Target:  5'- --aGGGUGGCGaCUucgccgcguUCCGUGGCGGCu -3'
miRNA:   3'- cggCCUACUGCcGAu--------AGGCACCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 13083 0.69 0.504227
Target:  5'- uGCCGGugucgGACGGCag-CUGUacGGUAACg -3'
miRNA:   3'- -CGGCCua---CUGCCGauaGGCA--CCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 39019 0.69 0.483405
Target:  5'- aGCCGGGUaugccGGuCGcGCUGUUCGgcacgGGCGACu -3'
miRNA:   3'- -CGGCCUA-----CU-GC-CGAUAGGCa----CCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 24690 0.7 0.452976
Target:  5'- cGCCGGuaacGGCGGCgcgCCGaacgugccgGGCGGCg -3'
miRNA:   3'- -CGGCCua--CUGCCGauaGGCa--------CCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 30795 0.7 0.443066
Target:  5'- cGCCGGGccGAauuCGcGCg--CCGUGGCGACu -3'
miRNA:   3'- -CGGCCUa-CU---GC-CGauaGGCACCGUUG- -5'
24139 3' -55.3 NC_005263.2 + 32879 0.8 0.102187
Target:  5'- uGCCGGcgGGCGGCgaguUUCGUGGCGucgGCg -3'
miRNA:   3'- -CGGCCuaCUGCCGau--AGGCACCGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.