miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24141 5' -56.3 NC_005263.2 + 25317 0.66 0.677063
Target:  5'- -gACCGC--UUCGACaccauguucaCGAGcCUCGGGCa -3'
miRNA:   3'- caUGGCGcuAGGCUG----------GCUU-GAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 38670 0.66 0.677063
Target:  5'- gGUGcCCGUcuuGAUCgGcCCGGGCggcaCGGGCa -3'
miRNA:   3'- -CAU-GGCG---CUAGgCuGGCUUGa---GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 10781 0.66 0.677063
Target:  5'- cUGCgCGCGGUCUGcuugUCGAAUgcgaaacauacuUCGGGCa -3'
miRNA:   3'- cAUG-GCGCUAGGCu---GGCUUG------------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 37872 0.66 0.666232
Target:  5'- aGUACCagacccagaacGCGAUCgCGuCUGGACUCGaGCc -3'
miRNA:   3'- -CAUGG-----------CGCUAG-GCuGGCUUGAGCcCG- -5'
24141 5' -56.3 NC_005263.2 + 28720 0.66 0.666232
Target:  5'- cGUACUGCGcgCCG-CCGAgGCUgacGGCa -3'
miRNA:   3'- -CAUGGCGCuaGGCuGGCU-UGAgc-CCG- -5'
24141 5' -56.3 NC_005263.2 + 33989 0.66 0.666232
Target:  5'- -aGCgGCGAggCCGGCCGuguuggcuGCgUCGcGGCg -3'
miRNA:   3'- caUGgCGCUa-GGCUGGCu-------UG-AGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 21258 0.66 0.666232
Target:  5'- -aGCCGCGcagugCUG-CUcuuggGGGCUCGGGCa -3'
miRNA:   3'- caUGGCGCua---GGCuGG-----CUUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 25227 0.66 0.666232
Target:  5'- -cGCCGUgccGAUcCCGGCCGAcgaauccgucacGCUCGG-Cg -3'
miRNA:   3'- caUGGCG---CUA-GGCUGGCU------------UGAGCCcG- -5'
24141 5' -56.3 NC_005263.2 + 6452 0.66 0.666232
Target:  5'- cUGCCGCcaGAgcaCGAgCGAGCgcgUGGGCc -3'
miRNA:   3'- cAUGGCG--CUag-GCUgGCUUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 25056 0.66 0.665146
Target:  5'- -aACaCGaCGAUCCcgacgucGACCGGcaAUUCGGGUg -3'
miRNA:   3'- caUG-GC-GCUAGG-------CUGGCU--UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 23797 0.66 0.665146
Target:  5'- -gACCGcCGAUgCGACgcgcgCGAgccaaucGCUCGGGUu -3'
miRNA:   3'- caUGGC-GCUAgGCUG-----GCU-------UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 22132 0.66 0.655369
Target:  5'- -aAgCGCGAUC--GCCGGACg-GGGCg -3'
miRNA:   3'- caUgGCGCUAGgcUGGCUUGagCCCG- -5'
24141 5' -56.3 NC_005263.2 + 47226 0.66 0.651017
Target:  5'- -cGCCGCGcugaacgaagcgCCGGCCGGcACgaCGGGUa -3'
miRNA:   3'- caUGGCGCua----------GGCUGGCU-UGa-GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 4695 0.66 0.644485
Target:  5'- cGUGCCGuCGGcgagcuUCUuGCCGGACUcgucCGGGUa -3'
miRNA:   3'- -CAUGGC-GCU------AGGcUGGCUUGA----GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 14641 0.66 0.644485
Target:  5'- -gGCuCGUGAUCacgcuGACCGAguugccagcGCUCGuGGCc -3'
miRNA:   3'- caUG-GCGCUAGg----CUGGCU---------UGAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 23017 0.66 0.644485
Target:  5'- -gAUCGCGGUauGACCGAcuauCUCGGccGCa -3'
miRNA:   3'- caUGGCGCUAggCUGGCUu---GAGCC--CG- -5'
24141 5' -56.3 NC_005263.2 + 32014 0.66 0.642306
Target:  5'- -aGCUGCGcgggugaacagCCGGCCGAucugcucgaUCGGGCc -3'
miRNA:   3'- caUGGCGCua---------GGCUGGCUug-------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 37413 0.66 0.641217
Target:  5'- cGUAUCGCGGUCgCGaaguggucggcuauGCCGAcCU-GGGCc -3'
miRNA:   3'- -CAUGGCGCUAG-GC--------------UGGCUuGAgCCCG- -5'
24141 5' -56.3 NC_005263.2 + 26643 0.66 0.637948
Target:  5'- uUGCCaGUGGcgCCGcagcgguggcgcuuCCGGAUUCGGGCa -3'
miRNA:   3'- cAUGG-CGCUa-GGCu-------------GGCUUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 24570 0.66 0.633589
Target:  5'- -cGCCaCGGUCgGcacGCCGAAUaucaugUCGGGCg -3'
miRNA:   3'- caUGGcGCUAGgC---UGGCUUG------AGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.