miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24146 5' -53.2 NC_005263.2 + 38089 0.66 0.777985
Target:  5'- cUCGGCGGcGGUGcuGCGCCcgcaccugGCGCGc -3'
miRNA:   3'- aAGCUGCU-UUACuuCGCGGa-------CGCGCu -5'
24146 5' -53.2 NC_005263.2 + 15469 0.66 0.767552
Target:  5'- -gCGACGAuuUGccGUGCUgcggcgGCGCGGu -3'
miRNA:   3'- aaGCUGCUuuACuuCGCGGa-----CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 41526 0.66 0.765448
Target:  5'- gUCGACuacuu---GCGCCUGCGCa- -3'
miRNA:   3'- aAGCUGcuuuacuuCGCGGACGCGcu -5'
24146 5' -53.2 NC_005263.2 + 1053 0.66 0.756971
Target:  5'- cUUCGACGAAuc--AGCGCUUGUaauccuuaGCGAc -3'
miRNA:   3'- -AAGCUGCUUuacuUCGCGGACG--------CGCU- -5'
24146 5' -53.2 NC_005263.2 + 3706 0.66 0.746252
Target:  5'- gUUCGaAUGGuuUGAuugAGCGCCUcGCGCa- -3'
miRNA:   3'- -AAGC-UGCUuuACU---UCGCGGA-CGCGcu -5'
24146 5' -53.2 NC_005263.2 + 20178 0.66 0.746252
Target:  5'- aUCGACGAc--GAGcGCGCC-GgGCGAc -3'
miRNA:   3'- aAGCUGCUuuaCUU-CGCGGaCgCGCU- -5'
24146 5' -53.2 NC_005263.2 + 42639 0.66 0.73541
Target:  5'- -aCGcCGAAGcGAAGUGgCUGCGCa- -3'
miRNA:   3'- aaGCuGCUUUaCUUCGCgGACGCGcu -5'
24146 5' -53.2 NC_005263.2 + 42322 0.66 0.73541
Target:  5'- -aCGGCGca--GcGGCGCgUGCGCGAc -3'
miRNA:   3'- aaGCUGCuuuaCuUCGCGgACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 30657 0.67 0.691055
Target:  5'- gUCGaacGCGAucUGAAGUGCauccugcaUGCGCGGg -3'
miRNA:   3'- aAGC---UGCUuuACUUCGCGg-------ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 1060 0.68 0.650277
Target:  5'- -gCGGCGcuugcgaggaggcuuGAcgGAAGUGCCgaauUGCGCGAc -3'
miRNA:   3'- aaGCUGC---------------UUuaCUUCGCGG----ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 42774 0.68 0.645722
Target:  5'- -aCGGCGgcGUGAcgauccAGCGCgaagGCGCGAa -3'
miRNA:   3'- aaGCUGCuuUACU------UCGCGga--CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 37359 0.68 0.645722
Target:  5'- -cCGACGGccgcauGCGCgUGCGCGAc -3'
miRNA:   3'- aaGCUGCUuuacuuCGCGgACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 42905 0.68 0.645722
Target:  5'- -gCGACGGuagGAcgccGCGCCUGCagGCGAu -3'
miRNA:   3'- aaGCUGCUuuaCUu---CGCGGACG--CGCU- -5'
24146 5' -53.2 NC_005263.2 + 7274 0.68 0.642304
Target:  5'- aUCGACGggGcgagcgacaUGAcGCGUgccugcggccagguCUGCGCGAu -3'
miRNA:   3'- aAGCUGCuuU---------ACUuCGCG--------------GACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 33086 0.68 0.634326
Target:  5'- gUCGGCG-AAUGAucUGCUUGCGCGc -3'
miRNA:   3'- aAGCUGCuUUACUucGCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 39685 0.68 0.634326
Target:  5'- -aCGugGAcgcGAUGggGCGa--GCGCGAg -3'
miRNA:   3'- aaGCugCU---UUACuuCGCggaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 41337 0.68 0.622928
Target:  5'- cUUCGACGAGGccGAGCucGCCcggcGCGCGAu -3'
miRNA:   3'- -AAGCUGCUUUacUUCG--CGGa---CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 18436 0.68 0.616093
Target:  5'- -gCGAUGAAccgcucgaggugcgcGUGAAGCaGCC-GCGCGGc -3'
miRNA:   3'- aaGCUGCUU---------------UACUUCG-CGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 22904 0.68 0.611539
Target:  5'- gUUCGugcCGGAcgGAGGUGCCcaagcUGCGCGc -3'
miRNA:   3'- -AAGCu--GCUUuaCUUCGCGG-----ACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 28104 0.68 0.611539
Target:  5'- aUCGACGugucgaucgcAAGUGccGCGCCgGgGCGAa -3'
miRNA:   3'- aAGCUGC----------UUUACuuCGCGGaCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.