miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24148 3' -56 NC_005263.2 + 9002 0.66 0.682096
Target:  5'- aCGGCGcACGAGucgcgcGUACUCGCcGUCCGg- -3'
miRNA:   3'- cGCUGC-UGUUC------CAUGAGCG-CGGGCag -5'
24148 3' -56 NC_005263.2 + 3604 0.66 0.682096
Target:  5'- gGUGACGGCcAGGaUGC-CGCcGUCgGUCa -3'
miRNA:   3'- -CGCUGCUGuUCC-AUGaGCG-CGGgCAG- -5'
24148 3' -56 NC_005263.2 + 23617 0.66 0.682096
Target:  5'- uCGGCGGCAccGUGgUCGagccggaGCUCGUCg -3'
miRNA:   3'- cGCUGCUGUucCAUgAGCg------CGGGCAG- -5'
24148 3' -56 NC_005263.2 + 30816 0.66 0.682096
Target:  5'- cGUGGCGACugc---CUCGCGCCagGUCu -3'
miRNA:   3'- -CGCUGCUGuuccauGAGCGCGGg-CAG- -5'
24148 3' -56 NC_005263.2 + 130 0.66 0.68101
Target:  5'- cGUGACGACGAucagauaaucacGGUucggugcgagcacGCgaucCGCGCCCGg- -3'
miRNA:   3'- -CGCUGCUGUU------------CCA-------------UGa---GCGCGGGCag -5'
24148 3' -56 NC_005263.2 + 1858 0.66 0.671214
Target:  5'- cCGGCGACGugcGGUucuggCGCGCCUGg- -3'
miRNA:   3'- cGCUGCUGUu--CCAuga--GCGCGGGCag -5'
24148 3' -56 NC_005263.2 + 11861 0.66 0.660295
Target:  5'- gGCGuucguuACGAgcAGGUGCUCGgGCUCG-Cg -3'
miRNA:   3'- -CGC------UGCUguUCCAUGAGCgCGGGCaG- -5'
24148 3' -56 NC_005263.2 + 24544 0.66 0.660295
Target:  5'- gGCGGCGGCGcGGgcggcgGCggcUGCGCCacgGUCg -3'
miRNA:   3'- -CGCUGCUGUuCCa-----UGa--GCGCGGg--CAG- -5'
24148 3' -56 NC_005263.2 + 20179 0.66 0.660295
Target:  5'- uCGACGACGAGcGcgccggGCgaCGCGCcgCCGUCg -3'
miRNA:   3'- cGCUGCUGUUC-Ca-----UGa-GCGCG--GGCAG- -5'
24148 3' -56 NC_005263.2 + 2654 0.66 0.660295
Target:  5'- cGCGcCGGgcuCGAGGUGCagGCGUgCGUUg -3'
miRNA:   3'- -CGCuGCU---GUUCCAUGagCGCGgGCAG- -5'
24148 3' -56 NC_005263.2 + 957 0.66 0.660295
Target:  5'- aGCGGCGACGuagcGGcGgUCGCcuGCgCGUCg -3'
miRNA:   3'- -CGCUGCUGUu---CCaUgAGCG--CGgGCAG- -5'
24148 3' -56 NC_005263.2 + 18739 0.66 0.649351
Target:  5'- cGCGuCGGCGccGGGUuaccggcgccuGCUCGCGCacCCGg- -3'
miRNA:   3'- -CGCuGCUGU--UCCA-----------UGAGCGCG--GGCag -5'
24148 3' -56 NC_005263.2 + 9545 0.66 0.649351
Target:  5'- aGCGAcCGACGcGGcGCUCGCgGCuuGcCa -3'
miRNA:   3'- -CGCU-GCUGUuCCaUGAGCG-CGggCaG- -5'
24148 3' -56 NC_005263.2 + 46161 0.66 0.649351
Target:  5'- cGCGGuugcCGGCGucgccGGUGCcggCGCGCUCGUg -3'
miRNA:   3'- -CGCU----GCUGUu----CCAUGa--GCGCGGGCAg -5'
24148 3' -56 NC_005263.2 + 27145 0.66 0.63839
Target:  5'- cGCGuCGGCGAuGUccgacaGCgCGCGCgCCGUCa -3'
miRNA:   3'- -CGCuGCUGUUcCA------UGaGCGCG-GGCAG- -5'
24148 3' -56 NC_005263.2 + 17052 0.66 0.6351
Target:  5'- gGCGGCGugAacggcuucaugaAGGUGCUCgagcagcgcacgccGCGCCuCGcCg -3'
miRNA:   3'- -CGCUGCugU------------UCCAUGAG--------------CGCGG-GCaG- -5'
24148 3' -56 NC_005263.2 + 9183 0.66 0.627424
Target:  5'- cGCGACGuCGAGcucgGCgcgGCGCCCGg- -3'
miRNA:   3'- -CGCUGCuGUUCca--UGag-CGCGGGCag -5'
24148 3' -56 NC_005263.2 + 43432 0.66 0.627424
Target:  5'- uGCGGCGgcuACAAGG-ACUaUGCGCagauugucgauaCCGUCa -3'
miRNA:   3'- -CGCUGC---UGUUCCaUGA-GCGCG------------GGCAG- -5'
24148 3' -56 NC_005263.2 + 43243 0.66 0.627424
Target:  5'- aGCGGCGGCAGcGGcaucgGCacggCGCGCgCGUa -3'
miRNA:   3'- -CGCUGCUGUU-CCa----UGa---GCGCGgGCAg -5'
24148 3' -56 NC_005263.2 + 10689 0.67 0.605514
Target:  5'- aUGACGACGAGGacgGC-CGCGCgacgcgaugcaCGUCg -3'
miRNA:   3'- cGCUGCUGUUCCa--UGaGCGCGg----------GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.