miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 68252 0.66 0.737789
Target:  5'- --uGCCCGcGCcgcGGGCGgCCUGCU-GCu -3'
miRNA:   3'- cauCGGGU-CGu--CCCGCaGGACGAgCG- -5'
24338 5' -60.4 NC_005264.1 + 110695 0.66 0.737789
Target:  5'- cGUGGggucuauaaucUCCAGCgucuccaucaccGGaGGCcUCCUGCUCGCu -3'
miRNA:   3'- -CAUC-----------GGGUCG------------UC-CCGcAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 155685 0.66 0.728213
Target:  5'- gGUGaCUCGGCAGGGCGUagccucaggCUGCccuucuUCGCg -3'
miRNA:   3'- -CAUcGGGUCGUCCCGCAg--------GACG------AGCG- -5'
24338 5' -60.4 NC_005264.1 + 45392 0.66 0.728213
Target:  5'- -aGGCgCGGCaaacgauggAGGGCGgcgcCCUGCgCGCc -3'
miRNA:   3'- caUCGgGUCG---------UCCCGCa---GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 149576 0.66 0.728213
Target:  5'- -cAGCCCcgGGCGGaGGgGggCUGCUCGa -3'
miRNA:   3'- caUCGGG--UCGUC-CCgCagGACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 109959 0.66 0.727251
Target:  5'- -cGGCCCugcugauGGCAGGuaccGCGagCCUGCcCGCu -3'
miRNA:   3'- caUCGGG-------UCGUCC----CGCa-GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 64682 0.66 0.718558
Target:  5'- -gGGCCUgccGGC-GGGCaggCCgUGCUCGCc -3'
miRNA:   3'- caUCGGG---UCGuCCCGca-GG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 87125 0.66 0.718558
Target:  5'- cGgcGCCC-GCGGGGCGcaCCaGUcuUCGCg -3'
miRNA:   3'- -CauCGGGuCGUCCCGCa-GGaCG--AGCG- -5'
24338 5' -60.4 NC_005264.1 + 41706 0.66 0.718558
Target:  5'- --uGCUC-GUAGGG-GUCCaUGCUUGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 160732 0.66 0.718558
Target:  5'- --uGCUC-GUAGGG-GUCCaUGCUUGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 2684 0.66 0.708832
Target:  5'- -gGGUCC-GCAagcGGGC-UCUUGCUUGCa -3'
miRNA:   3'- caUCGGGuCGU---CCCGcAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 108392 0.66 0.708832
Target:  5'- -cAGCUCGGCGguGGGCaUCCcccgcgccagcaUGUUCGCg -3'
miRNA:   3'- caUCGGGUCGU--CCCGcAGG------------ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 53079 0.66 0.699045
Target:  5'- -cGGaCCCAGCGGGaGUGUCUaaGCUgGUg -3'
miRNA:   3'- caUC-GGGUCGUCC-CGCAGGa-CGAgCG- -5'
24338 5' -60.4 NC_005264.1 + 1008 0.66 0.699045
Target:  5'- --cGCCCguguggugggggGGCAGGGgcCGUUCUGUauucUCGCg -3'
miRNA:   3'- cauCGGG------------UCGUCCC--GCAGGACG----AGCG- -5'
24338 5' -60.4 NC_005264.1 + 100724 0.66 0.699045
Target:  5'- cGUGGCuCUGGagAGGGCGcuggUCgaGCUCGCc -3'
miRNA:   3'- -CAUCG-GGUCg-UCCCGC----AGgaCGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 98640 0.66 0.698063
Target:  5'- -aGGCCgAGUcggaaguGGGGU-UCCUGCUCGa -3'
miRNA:   3'- caUCGGgUCG-------UCCCGcAGGACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 132938 0.66 0.689204
Target:  5'- -aGGCUggCAGUAGGGCGUUUcGC-CGCc -3'
miRNA:   3'- caUCGG--GUCGUCCCGCAGGaCGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 160449 0.67 0.679318
Target:  5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3'
miRNA:   3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5'
24338 5' -60.4 NC_005264.1 + 114971 0.67 0.679318
Target:  5'- -cAGCCUAGCgcgaacuugAGGcGCGUgCCggcGCUUGCa -3'
miRNA:   3'- caUCGGGUCG---------UCC-CGCA-GGa--CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 41422 0.67 0.679318
Target:  5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3'
miRNA:   3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.