miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2447 3' -55.5 NC_001434.1 + 2575 0.66 0.16326
Target:  5'- aGGAGCGaCGGCGugaAUUAuuGGCCGGg- -3'
miRNA:   3'- -CCUUGCgGCCGU---UAAUcgUCGGCCgg -5'
2447 3' -55.5 NC_001434.1 + 2224 0.67 0.156627
Target:  5'- aGGGGcCGCCGGgGuaagugUGGCGGCCcuacuagguaagaaGGCUc -3'
miRNA:   3'- -CCUU-GCGGCCgUua----AUCGUCGG--------------CCGG- -5'
2447 3' -55.5 NC_001434.1 + 5787 0.67 0.148321
Target:  5'- cGGACGUCGGgGuggUGGUGGUCuguGGCCa -3'
miRNA:   3'- cCUUGCGGCCgUua-AUCGUCGG---CCGG- -5'
2447 3' -55.5 NC_001434.1 + 822 0.67 0.143624
Target:  5'- cGGGGCuGCCGugaGUAAgaggacaaagUGGCAGCCaauGGCCc -3'
miRNA:   3'- -CCUUG-CGGC---CGUUa---------AUCGUCGG---CCGG- -5'
2447 3' -55.5 NC_001434.1 + 6665 0.68 0.118198
Target:  5'- cGAGCGaCCgGGCAAcggccuGCGcGCCGGUCg -3'
miRNA:   3'- cCUUGC-GG-CCGUUaau---CGU-CGGCCGG- -5'
2447 3' -55.5 NC_001434.1 + 2311 0.68 0.114391
Target:  5'- cGGGGC-CCgGGCGG-UAGCgccaggAGCCGGCUc -3'
miRNA:   3'- -CCUUGcGG-CCGUUaAUCG------UCGGCCGG- -5'
2447 3' -55.5 NC_001434.1 + 1305 0.69 0.110698
Target:  5'- -aGGCGCUGGCucu---CGGCCGGCUu -3'
miRNA:   3'- ccUUGCGGCCGuuaaucGUCGGCCGG- -5'
2447 3' -55.5 NC_001434.1 + 2857 0.7 0.079459
Target:  5'- -aGACGUCGGCcg--GGCcuguGCCGGCUg -3'
miRNA:   3'- ccUUGCGGCCGuuaaUCGu---CGGCCGG- -5'
2447 3' -55.5 NC_001434.1 + 2257 0.7 0.076844
Target:  5'- --uGCuCCGGCGcgUGGUgAGCCGGCUc -3'
miRNA:   3'- ccuUGcGGCCGUuaAUCG-UCGGCCGG- -5'
2447 3' -55.5 NC_001434.1 + 2909 0.71 0.067188
Target:  5'- -cAACGCCGGgGGUgacucGaCAGCCGGCa -3'
miRNA:   3'- ccUUGCGGCCgUUAau---C-GUCGGCCGg -5'
2447 3' -55.5 NC_001434.1 + 5468 0.84 0.005639
Target:  5'- cGGAGCGaCC-GCGGUUAGCGGCgCGGCCc -3'
miRNA:   3'- -CCUUGC-GGcCGUUAAUCGUCG-GCCGG- -5'
2447 3' -55.5 NC_001434.1 + 409 1.13 2e-05
Target:  5'- cGGAACGCCGGCAAUUAGCAGCCGGCCc -3'
miRNA:   3'- -CCUUGCGGCCGUUAAUCGUCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.