miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25065 5' -50.9 NC_005336.1 + 111428 0.66 0.991381
Target:  5'- gUGCUugCGAuCCUcGAGUCgcuucuGGGCGAUGGAg -3'
miRNA:   3'- -AUGG--GUU-GGAuUUUAG------CCCGCUACCU- -5'
25065 5' -50.9 NC_005336.1 + 5884 0.66 0.991381
Target:  5'- aGCCCGgcGCCg-----CGGGCG-UGGGc -3'
miRNA:   3'- aUGGGU--UGGauuuuaGCCCGCuACCU- -5'
25065 5' -50.9 NC_005336.1 + 59267 0.66 0.990117
Target:  5'- cGCUCGACCUuugAAAAgccgCGGGCGAc--- -3'
miRNA:   3'- aUGGGUUGGA---UUUUa---GCCCGCUaccu -5'
25065 5' -50.9 NC_005336.1 + 89513 0.66 0.990117
Target:  5'- gGCCCcguuggccACCUGGAAaaGGGCGAggccgccgaUGGAc -3'
miRNA:   3'- aUGGGu-------UGGAUUUUagCCCGCU---------ACCU- -5'
25065 5' -50.9 NC_005336.1 + 113921 0.66 0.987158
Target:  5'- gGCUCGACgCgGAGGUCGcGGCcGUGGAc -3'
miRNA:   3'- aUGGGUUG-GaUUUUAGC-CCGcUACCU- -5'
25065 5' -50.9 NC_005336.1 + 61081 0.66 0.987158
Target:  5'- -cUCCAGCUc---AUCGGGCauGAUGGAg -3'
miRNA:   3'- auGGGUUGGauuuUAGCCCG--CUACCU- -5'
25065 5' -50.9 NC_005336.1 + 8260 0.66 0.984142
Target:  5'- aGCCCAGCCggaugagcucgcgcaUGAcgcucgcGcgCGGGCGcGUGGAc -3'
miRNA:   3'- aUGGGUUGG---------------AUU-------UuaGCCCGC-UACCU- -5'
25065 5' -50.9 NC_005336.1 + 95578 0.66 0.983559
Target:  5'- cGCUCuACCUcc--UCGGGCGcgGGGu -3'
miRNA:   3'- aUGGGuUGGAuuuuAGCCCGCuaCCU- -5'
25065 5' -50.9 NC_005336.1 + 90444 0.67 0.979243
Target:  5'- cGCCgGAgCUGGucacgcgcGcgCGGGCGAUGGu -3'
miRNA:   3'- aUGGgUUgGAUU--------UuaGCCCGCUACCu -5'
25065 5' -50.9 NC_005336.1 + 134216 0.67 0.97414
Target:  5'- gACCCcGCCUGug--CGGGCGAg--- -3'
miRNA:   3'- aUGGGuUGGAUuuuaGCCCGCUaccu -5'
25065 5' -50.9 NC_005336.1 + 60454 0.68 0.961308
Target:  5'- cGCCCGGCCUucaucGAGAUgcCGcGGCGGcgcgUGGAg -3'
miRNA:   3'- aUGGGUUGGA-----UUUUA--GC-CCGCU----ACCU- -5'
25065 5' -50.9 NC_005336.1 + 132747 0.68 0.953468
Target:  5'- cGCUCAACCgcauGUCGcGGCGcgGGu -3'
miRNA:   3'- aUGGGUUGGauuuUAGC-CCGCuaCCu -5'
25065 5' -50.9 NC_005336.1 + 29926 0.69 0.939813
Target:  5'- aGCUCAucGCCUucGcgCGGGCG-UGGAg -3'
miRNA:   3'- aUGGGU--UGGAuuUuaGCCCGCuACCU- -5'
25065 5' -50.9 NC_005336.1 + 132845 0.69 0.92941
Target:  5'- cGCUCAugCUGGAggCGGGCGcagacGUGGu -3'
miRNA:   3'- aUGGGUugGAUUUuaGCCCGC-----UACCu -5'
25065 5' -50.9 NC_005336.1 + 110196 0.69 0.928863
Target:  5'- cGCCCuGCgUGAGcgCGGGCcacugcaGGUGGAa -3'
miRNA:   3'- aUGGGuUGgAUUUuaGCCCG-------CUACCU- -5'
25065 5' -50.9 NC_005336.1 + 132587 0.73 0.781731
Target:  5'- -uUCCGcuACCUGGAGUcCGGGCaGGUGGAu -3'
miRNA:   3'- auGGGU--UGGAUUUUA-GCCCG-CUACCU- -5'
25065 5' -50.9 NC_005336.1 + 71916 0.76 0.636244
Target:  5'- cGCCCAGCCUGGAccgcGUCGGcGCGGcgcUGGc -3'
miRNA:   3'- aUGGGUUGGAUUU----UAGCC-CGCU---ACCu -5'
25065 5' -50.9 NC_005336.1 + 98028 0.77 0.604042
Target:  5'- cUGCCCAACCUGGAcgCGcucGCGGUGGc -3'
miRNA:   3'- -AUGGGUUGGAUUUuaGCc--CGCUACCu -5'
25065 5' -50.9 NC_005336.1 + 118754 0.94 0.068463
Target:  5'- aUACCCAA-CUAAAAUCGGGCGAUGGAc -3'
miRNA:   3'- -AUGGGUUgGAUUUUAGCCCGCUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.