miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25071 3' -58.4 NC_005336.1 + 81827 0.66 0.813941
Target:  5'- aCCGCGUCGgGCGguugugcagcGCCGC-GUUCAg -3'
miRNA:   3'- aGGUGCAGCaCGCa---------CGGCGaCAGGUg -5'
25071 3' -58.4 NC_005336.1 + 86092 0.66 0.813941
Target:  5'- gUCCACGUC---CGUGUCGaaGUCCAg -3'
miRNA:   3'- -AGGUGCAGcacGCACGGCgaCAGGUg -5'
25071 3' -58.4 NC_005336.1 + 136011 0.66 0.813941
Target:  5'- gCCGCGgCGcugGCG-GCCGCgggCCGCg -3'
miRNA:   3'- aGGUGCaGCa--CGCaCGGCGacaGGUG- -5'
25071 3' -58.4 NC_005336.1 + 71928 0.66 0.813941
Target:  5'- aCCGCGUCG-GCGcGgCGCUGgcgUgGCg -3'
miRNA:   3'- aGGUGCAGCaCGCaCgGCGACa--GgUG- -5'
25071 3' -58.4 NC_005336.1 + 136011 0.66 0.813941
Target:  5'- gCCGCGgCGcugGCG-GCCGCgggCCGCg -3'
miRNA:   3'- aGGUGCaGCa--CGCaCGGCGacaGGUG- -5'
25071 3' -58.4 NC_005336.1 + 41990 0.66 0.805254
Target:  5'- gCCGCGccUCGcccGCGgccaugGCCGCgaccacggUGUCCACg -3'
miRNA:   3'- aGGUGC--AGCa--CGCa-----CGGCG--------ACAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 75535 0.66 0.805254
Target:  5'- gUCCACGagcuuggCGcGCGUGUCGCgcGUgCGCg -3'
miRNA:   3'- -AGGUGCa------GCaCGCACGGCGa-CAgGUG- -5'
25071 3' -58.4 NC_005336.1 + 123674 0.66 0.805254
Target:  5'- gCCACGUCGcgcgacgcgcGCGgacgcacGCCGCUGcaCCACc -3'
miRNA:   3'- aGGUGCAGCa---------CGCa------CGGCGACa-GGUG- -5'
25071 3' -58.4 NC_005336.1 + 122120 0.66 0.796413
Target:  5'- gCCAgG-CGcGCGUGCCGgCUcGUCCGg -3'
miRNA:   3'- aGGUgCaGCaCGCACGGC-GA-CAGGUg -5'
25071 3' -58.4 NC_005336.1 + 97259 0.66 0.796413
Target:  5'- gCCGCGcgguggUGUGCGUGCCcaaccgcauGCUaGUgCCGCa -3'
miRNA:   3'- aGGUGCa-----GCACGCACGG---------CGA-CA-GGUG- -5'
25071 3' -58.4 NC_005336.1 + 82208 0.66 0.796413
Target:  5'- gUCgAUGUCGUGaucaucuUGCUGgaGUCCACc -3'
miRNA:   3'- -AGgUGCAGCACgc-----ACGGCgaCAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 29275 0.66 0.796413
Target:  5'- uUCgaGCGUCGcggucuugGCGUGCCGCccuuUGcgCCACu -3'
miRNA:   3'- -AGg-UGCAGCa-------CGCACGGCG----ACa-GGUG- -5'
25071 3' -58.4 NC_005336.1 + 26354 0.66 0.796413
Target:  5'- gCCGgG-CGcGCGcGCCGCggaGUCCGCg -3'
miRNA:   3'- aGGUgCaGCaCGCaCGGCGa--CAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 43976 0.66 0.796413
Target:  5'- -gCACG-CG-GCccaUGCgGCUGUCCACg -3'
miRNA:   3'- agGUGCaGCaCGc--ACGgCGACAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 124428 0.66 0.796413
Target:  5'- gUCGCGucUCGUGUguccGUGCgCGCUG-CCGCc -3'
miRNA:   3'- aGGUGC--AGCACG----CACG-GCGACaGGUG- -5'
25071 3' -58.4 NC_005336.1 + 95812 0.66 0.796413
Target:  5'- -gCGCGUCcUGCGUggacaGCCGCaUGggCCGCg -3'
miRNA:   3'- agGUGCAGcACGCA-----CGGCG-ACa-GGUG- -5'
25071 3' -58.4 NC_005336.1 + 38605 0.66 0.79552
Target:  5'- gCCGCG-CGUgcagaucGCGUGgUGCaggaUGUCCACg -3'
miRNA:   3'- aGGUGCaGCA-------CGCACgGCG----ACAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 124260 0.66 0.787426
Target:  5'- gCCGCGcgCGgcGCGaUGCUGCUcUCCACc -3'
miRNA:   3'- aGGUGCa-GCa-CGC-ACGGCGAcAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 118086 0.66 0.787426
Target:  5'- -aCAgGUCcugGCG-GUCGUUGUCCGCg -3'
miRNA:   3'- agGUgCAGca-CGCaCGGCGACAGGUG- -5'
25071 3' -58.4 NC_005336.1 + 130790 0.66 0.787426
Target:  5'- gUCCGCGccuUCGcgGCGagcuacgcgcGCCGCgccGUCCACg -3'
miRNA:   3'- -AGGUGC---AGCa-CGCa---------CGGCGa--CAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.