miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25163 5' -57.9 NC_005336.1 + 76163 0.66 0.826518
Target:  5'- cGCCgCCGUugAAGAGcGGCGUCuGCCCGa -3'
miRNA:   3'- -UGG-GGCA--UUUUCcUCGCGGcUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 46711 0.66 0.826518
Target:  5'- cACCCCGacucgguggUGAGccuGGAGC-CCGACCuCGa -3'
miRNA:   3'- -UGGGGC---------AUUUu--CCUCGcGGCUGG-GCa -5'
25163 5' -57.9 NC_005336.1 + 49557 0.66 0.818054
Target:  5'- gGCCCCG-AGAcuGAGCGCCGcugcACgCGg -3'
miRNA:   3'- -UGGGGCaUUUucCUCGCGGC----UGgGCa -5'
25163 5' -57.9 NC_005336.1 + 138782 0.66 0.818054
Target:  5'- gACCgCGggGAGcGGAGCgGCCGACCg-- -3'
miRNA:   3'- -UGGgGCauUUU-CCUCG-CGGCUGGgca -5'
25163 5' -57.9 NC_005336.1 + 88110 0.66 0.818054
Target:  5'- -gCCCGUccAGcGcGAGCGCCGgcACCCGg -3'
miRNA:   3'- ugGGGCAuuUU-C-CUCGCGGC--UGGGCa -5'
25163 5' -57.9 NC_005336.1 + 138782 0.66 0.818054
Target:  5'- gACCgCGggGAGcGGAGCgGCCGACCg-- -3'
miRNA:   3'- -UGGgGCauUUU-CCUCG-CGGCUGGgca -5'
25163 5' -57.9 NC_005336.1 + 14973 0.67 0.7917
Target:  5'- -aCCCGUGcagcGGcGAGCGCCGAgCgCCGg -3'
miRNA:   3'- ugGGGCAUuu--UC-CUCGCGGCU-G-GGCa -5'
25163 5' -57.9 NC_005336.1 + 61924 0.67 0.772483
Target:  5'- aGCgCCGggAAGAGGucgcagaGGUGCCGGCUCGa -3'
miRNA:   3'- -UGgGGCa-UUUUCC-------UCGCGGCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 45620 0.67 0.754626
Target:  5'- aACCCCGcacc---GGCGCCGACCgCGg -3'
miRNA:   3'- -UGGGGCauuuuccUCGCGGCUGG-GCa -5'
25163 5' -57.9 NC_005336.1 + 8516 0.67 0.753675
Target:  5'- -gCCCGUAAGgcAGGcguguAGCGCCGugcggcgcacgccGCCCGg -3'
miRNA:   3'- ugGGGCAUUU--UCC-----UCGCGGC-------------UGGGCa -5'
25163 5' -57.9 NC_005336.1 + 23970 0.67 0.74507
Target:  5'- -gCCCGgc-GAGGAcgugcuccgccGCGCCGGCuCCGUc -3'
miRNA:   3'- ugGGGCauuUUCCU-----------CGCGGCUG-GGCA- -5'
25163 5' -57.9 NC_005336.1 + 6255 0.67 0.74507
Target:  5'- uCCUCGaagcGGAAGGucGCGCCGGCCgCGg -3'
miRNA:   3'- uGGGGCa---UUUUCCu-CGCGGCUGG-GCa -5'
25163 5' -57.9 NC_005336.1 + 54160 0.68 0.735417
Target:  5'- uCCUCGUc--GGGcGCGuCCGGCCCGg -3'
miRNA:   3'- uGGGGCAuuuUCCuCGC-GGCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 68090 0.68 0.725675
Target:  5'- gGCCUCG-AGAAGcGGGcCGgCGGCCCGa -3'
miRNA:   3'- -UGGGGCaUUUUC-CUC-GCgGCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 124690 0.68 0.725675
Target:  5'- gGCCCgCGgcGucGGcgGGCGCCGACCg-- -3'
miRNA:   3'- -UGGG-GCauUuuCC--UCGCGGCUGGgca -5'
25163 5' -57.9 NC_005336.1 + 119595 0.68 0.705964
Target:  5'- aGCCacgugcaCGUGGAcGaGAGCGUgGACCCGUu -3'
miRNA:   3'- -UGGg------GCAUUUuC-CUCGCGgCUGGGCA- -5'
25163 5' -57.9 NC_005336.1 + 24054 0.68 0.686008
Target:  5'- gGCCCCGUAcAcgcagcggcgcGGGuGCGCCacGGCCuCGUa -3'
miRNA:   3'- -UGGGGCAUuU-----------UCCuCGCGG--CUGG-GCA- -5'
25163 5' -57.9 NC_005336.1 + 123463 0.69 0.67596
Target:  5'- cACCCCGccgcGGAGG-GCGCCGugcGCUCGa -3'
miRNA:   3'- -UGGGGCau--UUUCCuCGCGGC---UGGGCa -5'
25163 5' -57.9 NC_005336.1 + 95039 0.69 0.67596
Target:  5'- uCCUCGUAGGAcauGGucGGCGUgGACCCGg -3'
miRNA:   3'- uGGGGCAUUUU---CC--UCGCGgCUGGGCa -5'
25163 5' -57.9 NC_005336.1 + 5887 0.69 0.645637
Target:  5'- gACCuuGccGAAG-AGCGCCGuCCCGUa -3'
miRNA:   3'- -UGGggCauUUUCcUCGCGGCuGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.