miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2538 3' -44.9 NC_001460.1 + 10524 0.69 0.954266
Target:  5'- -cAUUGGAGUUGGAAgaaggagaAGGCAuaGCCc -3'
miRNA:   3'- caUAAUUUCAACCUUg-------UCUGUggCGG- -5'
2538 3' -44.9 NC_001460.1 + 8979 0.71 0.898072
Target:  5'- ---cUGGAGUUGcGAGCuGcCACCGUCa -3'
miRNA:   3'- cauaAUUUCAAC-CUUGuCuGUGGCGG- -5'
2538 3' -44.9 NC_001460.1 + 18566 0.71 0.890127
Target:  5'- -------uGUUGGGACAGcaaGCAgCGCCa -3'
miRNA:   3'- cauaauuuCAACCUUGUC---UGUgGCGG- -5'
2538 3' -44.9 NC_001460.1 + 18196 1.13 0.003978
Target:  5'- gGUAUUAAAGUUGGAACAGACACCGCCc -3'
miRNA:   3'- -CAUAAUUUCAACCUUGUCUGUGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.