miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 75753 0.65 0.947618
Target:  5'- aCGUCACcaGCAUCGagggcgugauuccGCCGCucguuaaGCuGCUGGa -3'
miRNA:   3'- -GUAGUGaaCGUAGC-------------UGGCG-------CG-CGACC- -5'
25507 3' -54.4 NC_005337.1 + 94256 0.66 0.944048
Target:  5'- --cCGCUaGCAUCuccACCGCGCGgaUGGc -3'
miRNA:   3'- guaGUGAaCGUAGc--UGGCGCGCg-ACC- -5'
25507 3' -54.4 NC_005337.1 + 8143 0.66 0.944048
Target:  5'- --aCGCcggGCAU-GGCCGCGCGCa-- -3'
miRNA:   3'- guaGUGaa-CGUAgCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 36211 0.66 0.944048
Target:  5'- uCGUCGuuuUUUGCGcCGGCCGCgGCGCg-- -3'
miRNA:   3'- -GUAGU---GAACGUaGCUGGCG-CGCGacc -5'
25507 3' -54.4 NC_005337.1 + 88932 0.66 0.944048
Target:  5'- cCGUCGucUGCGagcUCgcgGACCGCGCGgaGGc -3'
miRNA:   3'- -GUAGUgaACGU---AG---CUGGCGCGCgaCC- -5'
25507 3' -54.4 NC_005337.1 + 105353 0.66 0.944048
Target:  5'- ---gGCUccCGUCGAUCGCGUGCUuGGu -3'
miRNA:   3'- guagUGAacGUAGCUGGCGCGCGA-CC- -5'
25507 3' -54.4 NC_005337.1 + 126436 0.66 0.944048
Target:  5'- --gCGCgcgUGCG-CGuguaccACCGCGCGCUGu -3'
miRNA:   3'- guaGUGa--ACGUaGC------UGGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 78080 0.66 0.943591
Target:  5'- -cUC-CUUGCGguaGAgcuuguuCCGCGCGCUGa -3'
miRNA:   3'- guAGuGAACGUag-CU-------GGCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 100393 0.66 0.939369
Target:  5'- gCAUCGagUGCG-CGGgCGCGCGCUa- -3'
miRNA:   3'- -GUAGUgaACGUaGCUgGCGCGCGAcc -5'
25507 3' -54.4 NC_005337.1 + 67956 0.66 0.939369
Target:  5'- uGUCGCcaGCccgCGACCGCgGCGCUc- -3'
miRNA:   3'- gUAGUGaaCGua-GCUGGCG-CGCGAcc -5'
25507 3' -54.4 NC_005337.1 + 123928 0.66 0.934444
Target:  5'- --cCGCUgcgGCGgcgaCGGCCGCGUGCa-- -3'
miRNA:   3'- guaGUGAa--CGUa---GCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 47996 0.66 0.934444
Target:  5'- gCcgCACUgcgugGCcUgGAuCCGCGCGCUGcGg -3'
miRNA:   3'- -GuaGUGAa----CGuAgCU-GGCGCGCGAC-C- -5'
25507 3' -54.4 NC_005337.1 + 50761 0.66 0.929273
Target:  5'- --aCGCgcGCAUCGACCuCGCGCc-- -3'
miRNA:   3'- guaGUGaaCGUAGCUGGcGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 14411 0.66 0.929273
Target:  5'- gGUUguGCUUGCcgCGcgacguGCCGC-CGCUGGc -3'
miRNA:   3'- gUAG--UGAACGuaGC------UGGCGcGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 82173 0.66 0.923857
Target:  5'- cCGUCGCgcaccUGCAcgCGGCCGCcggGCGCgcacGGc -3'
miRNA:   3'- -GUAGUGa----ACGUa-GCUGGCG---CGCGa---CC- -5'
25507 3' -54.4 NC_005337.1 + 131904 0.66 0.923857
Target:  5'- --gCACguggacGCgGUCGACCggugcugcgGCGCGCUGGc -3'
miRNA:   3'- guaGUGaa----CG-UAGCUGG---------CGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 101500 0.66 0.923857
Target:  5'- --gCGCUcaUGCG-CGAgcgcuCCGCGCgGCUGGa -3'
miRNA:   3'- guaGUGA--ACGUaGCU-----GGCGCG-CGACC- -5'
25507 3' -54.4 NC_005337.1 + 124423 0.66 0.923857
Target:  5'- gGUC-CUggGCAaCG-CCGCGCGCgGGu -3'
miRNA:   3'- gUAGuGAa-CGUaGCuGGCGCGCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 23908 0.66 0.923857
Target:  5'- uGUCGCUgccGCG-CGcCCGCGCGCc-- -3'
miRNA:   3'- gUAGUGAa--CGUaGCuGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 108747 0.66 0.923857
Target:  5'- -cUCGCggcGCGUgGGCCGCuGC-CUGGa -3'
miRNA:   3'- guAGUGaa-CGUAgCUGGCG-CGcGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.