miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25507 3' -54.4 NC_005337.1 + 36483 0.67 0.912284
Target:  5'- gCcgCACggccuugGCcgCGGCCGCgGCGCUcGGc -3'
miRNA:   3'- -GuaGUGaa-----CGuaGCUGGCG-CGCGA-CC- -5'
25507 3' -54.4 NC_005337.1 + 3460 0.68 0.879126
Target:  5'- gAUCACggcgGCAcugggucgucgCGACUGCGCguGCUGGu -3'
miRNA:   3'- gUAGUGaa--CGUa----------GCUGGCGCG--CGACC- -5'
25507 3' -54.4 NC_005337.1 + 94744 0.68 0.879126
Target:  5'- --gCGCcgGCAgccaCGACCGCGaGCUGGc -3'
miRNA:   3'- guaGUGaaCGUa---GCUGGCGCgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 101226 0.68 0.879126
Target:  5'- gGUCGCggagGCGUCcGCgCGCgugcucGCGCUGGa -3'
miRNA:   3'- gUAGUGaa--CGUAGcUG-GCG------CGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 130021 0.68 0.879126
Target:  5'- aAUCACgcgGCcgCGGUCGcCGCGCUGa -3'
miRNA:   3'- gUAGUGaa-CGuaGCUGGC-GCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 20309 0.67 0.899734
Target:  5'- gCAUCugU-GCAggCGGCguUGCGCGCUGc -3'
miRNA:   3'- -GUAGugAaCGUa-GCUG--GCGCGCGACc -5'
25507 3' -54.4 NC_005337.1 + 89850 0.67 0.899734
Target:  5'- -uUCACggccucgagcUGCuucucCGAgCGCGCGCUGGc -3'
miRNA:   3'- guAGUGa---------ACGua---GCUgGCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 105667 0.67 0.905501
Target:  5'- cCGUCACUguccucgUGCGUCcaGACgCGgugGCGCUGGu -3'
miRNA:   3'- -GUAGUGA-------ACGUAG--CUG-GCg--CGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 36797 0.67 0.90613
Target:  5'- --cCGCUggGCGUCaGCCGCGuCGCcGGu -3'
miRNA:   3'- guaGUGAa-CGUAGcUGGCGC-GCGaCC- -5'
25507 3' -54.4 NC_005337.1 + 43814 0.68 0.876951
Target:  5'- gGUCGCUcaucaccuccacgcUGCAgcgggcCGGCgGCGCGgUGGa -3'
miRNA:   3'- gUAGUGA--------------ACGUa-----GCUGgCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 39136 0.68 0.871797
Target:  5'- -cUCGCUcgUGCuuaUGACgGCGaCGCUGGa -3'
miRNA:   3'- guAGUGA--ACGua-GCUGgCGC-GCGACC- -5'
25507 3' -54.4 NC_005337.1 + 38317 0.69 0.840325
Target:  5'- gCGUCGagcGCAaCGACCGaCGCGuCUGGc -3'
miRNA:   3'- -GUAGUgaaCGUaGCUGGC-GCGC-GACC- -5'
25507 3' -54.4 NC_005337.1 + 21516 0.73 0.595554
Target:  5'- gCGUUA-UUGCAgcagCGACCGCGCGCggcGGc -3'
miRNA:   3'- -GUAGUgAACGUa---GCUGGCGCGCGa--CC- -5'
25507 3' -54.4 NC_005337.1 + 23087 0.72 0.688812
Target:  5'- ---uGCccgGCAUCGugCGCGCGgUGGu -3'
miRNA:   3'- guagUGaa-CGUAGCugGCGCGCgACC- -5'
25507 3' -54.4 NC_005337.1 + 74932 0.7 0.749183
Target:  5'- -uUCGCgcGCG-CGGCCGCGCggaugcgguGCUGGg -3'
miRNA:   3'- guAGUGaaCGUaGCUGGCGCG---------CGACC- -5'
25507 3' -54.4 NC_005337.1 + 68126 0.7 0.749183
Target:  5'- gGUCGCgggGCcggUGGCCGCGCGCg-- -3'
miRNA:   3'- gUAGUGaa-CGua-GCUGGCGCGCGacc -5'
25507 3' -54.4 NC_005337.1 + 133635 0.7 0.75893
Target:  5'- cCGUCGCcgUGCAggaCG-UCGcCGCGCUGGa -3'
miRNA:   3'- -GUAGUGa-ACGUa--GCuGGC-GCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 130117 0.69 0.805738
Target:  5'- gCAUCACggcucUGUGUCGcguacgugguCgCGCGCGCUGGc -3'
miRNA:   3'- -GUAGUGa----ACGUAGCu---------G-GCGCGCGACC- -5'
25507 3' -54.4 NC_005337.1 + 11084 0.69 0.81465
Target:  5'- gGUCGCc-GCcgCGACCGCa-GCUGGa -3'
miRNA:   3'- gUAGUGaaCGuaGCUGGCGcgCGACC- -5'
25507 3' -54.4 NC_005337.1 + 1555 0.69 0.82339
Target:  5'- --cCGCUUG-AUC-ACCGCGCGCaUGGc -3'
miRNA:   3'- guaGUGAACgUAGcUGGCGCGCG-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.