miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 77396 0.67 0.946083
Target:  5'- uGGcGCC-AGGAucuucgucgCCAUgcgcuggcggugCAUGCGCACGa -3'
miRNA:   3'- -CC-CGGuUCCUua-------GGUA------------GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 86462 0.67 0.945631
Target:  5'- aGGCCGgcgucgaagcgcgAGGggUCgCA-CGUGCGCAg- -3'
miRNA:   3'- cCCGGU-------------UCCuuAG-GUaGUACGCGUgc -5'
25510 5' -53.2 NC_005337.1 + 95271 0.67 0.941458
Target:  5'- aGGGUCAGccgguggguGGAcaugacgaGUCCGUag-GCGCGCGg -3'
miRNA:   3'- -CCCGGUU---------CCU--------UAGGUAguaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 133837 0.67 0.936584
Target:  5'- -uGUCAAGGcGUCCGUgCGUcCGCACGa -3'
miRNA:   3'- ccCGGUUCCuUAGGUA-GUAcGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 110057 0.67 0.936584
Target:  5'- cGGCCGGGGGcagcUCCAccUCGacGCGCGCc -3'
miRNA:   3'- cCCGGUUCCUu---AGGU--AGUa-CGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 118785 0.67 0.936584
Target:  5'- -cGCCGgcGGcGGcgCCGUCGUGcCGCGCGc -3'
miRNA:   3'- ccCGGU--UC-CUuaGGUAGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 37428 0.67 0.936584
Target:  5'- cGGaGCCGGGGGAacgCCAcgccgCGgcUGCGCACc -3'
miRNA:   3'- -CC-CGGUUCCUUa--GGUa----GU--ACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 133837 0.67 0.936584
Target:  5'- -uGUCAAGGcGUCCGUgCGUcCGCACGa -3'
miRNA:   3'- ccCGGUUCCuUAGGUA-GUAcGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 128773 0.67 0.936083
Target:  5'- aGGCgCAGGcggauucGggUCCAcgggCGUGCGCACc -3'
miRNA:   3'- cCCG-GUUC-------CuuAGGUa---GUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 95230 0.67 0.931459
Target:  5'- cGGUCGcGcGAcugGUCCGugcacUCGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuC-CU---UAGGU-----AGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 46304 0.67 0.92442
Target:  5'- uGGGCCAccugcuggaccuccAGGAGgacaUCAUCGUGUacucGCACa -3'
miRNA:   3'- -CCCGGU--------------UCCUUa---GGUAGUACG----CGUGc -5'
25510 5' -53.2 NC_005337.1 + 86119 0.68 0.922735
Target:  5'- -cGCgCGAGGAGUCCGgcuccgugcccaucuUCA-GCGCGCa -3'
miRNA:   3'- ccCG-GUUCCUUAGGU---------------AGUaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 101086 0.68 0.920453
Target:  5'- -cGCCGucGGGAGggcCCGUCcgGCGCGgGg -3'
miRNA:   3'- ccCGGU--UCCUUa--GGUAGuaCGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 33837 0.68 0.920453
Target:  5'- aGGGCCGuguuuaugaAGucGUCCA-CGUgGCGCGCGu -3'
miRNA:   3'- -CCCGGU---------UCcuUAGGUaGUA-CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 89176 0.68 0.920453
Target:  5'- uGGcGCCGAGGcGUCUAUUAcguaGgGCACGu -3'
miRNA:   3'- -CC-CGGUUCCuUAGGUAGUa---CgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 117821 0.68 0.920453
Target:  5'- uGGcGCCcGGGGAcCCGggcgggGUGCGCACGc -3'
miRNA:   3'- -CC-CGGuUCCUUaGGUag----UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 126421 0.68 0.920453
Target:  5'- cGGCCGAccuGGAcUCCAcgcUCccGCGCACc -3'
miRNA:   3'- cCCGGUU---CCUuAGGU---AGuaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 2353 0.68 0.918715
Target:  5'- gGGGCCAGcgcgccgcagcaccGGucgaccgcGUCCA-CGUGCGCGCc -3'
miRNA:   3'- -CCCGGUU--------------CCu-------UAGGUaGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 100789 0.68 0.914571
Target:  5'- -uGCaCGAGGAGUCUA-CGUGCGCcugGCGc -3'
miRNA:   3'- ccCG-GUUCCUUAGGUaGUACGCG---UGC- -5'
25510 5' -53.2 NC_005337.1 + 86163 0.68 0.913969
Target:  5'- uGGCgGGGGAGggguagcUgCAgcgCAUGCGCGCGc -3'
miRNA:   3'- cCCGgUUCCUU-------AgGUa--GUACGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.