miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25515 3' -51.3 NC_005337.1 + 1416 0.66 0.991801
Target:  5'- gAUCAccacguUGCUGACGugGUGuAUGCCGGCg- -3'
miRNA:   3'- gUAGU------AUGACUGC--UAC-UGCGGCUGgg -5'
25515 3' -51.3 NC_005337.1 + 16053 0.66 0.991801
Target:  5'- uCcgCGcACUGcAUGAUGACGUCGggcggcuccgcGCCCa -3'
miRNA:   3'- -GuaGUaUGAC-UGCUACUGCGGC-----------UGGG- -5'
25515 3' -51.3 NC_005337.1 + 39140 0.66 0.991688
Target:  5'- -cUCGUGCuuaUGACGgcGACGCuggaggaCGACCg -3'
miRNA:   3'- guAGUAUG---ACUGCuaCUGCG-------GCUGGg -5'
25515 3' -51.3 NC_005337.1 + 78983 0.66 0.990609
Target:  5'- gCGUguUGCgGAUGuagucgggGAUGCCGACCUc -3'
miRNA:   3'- -GUAguAUGaCUGCua------CUGCGGCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 433 0.66 0.990609
Target:  5'- gGUCGUGCgGACGcacgGACGCCuuGACa- -3'
miRNA:   3'- gUAGUAUGaCUGCua--CUGCGG--CUGgg -5'
25515 3' -51.3 NC_005337.1 + 90570 0.66 0.990609
Target:  5'- --cCGUACacgGACGAgcucACGUgGACCCg -3'
miRNA:   3'- guaGUAUGa--CUGCUac--UGCGgCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 433 0.66 0.990609
Target:  5'- gGUCGUGCgGACGcacgGACGCCuuGACa- -3'
miRNA:   3'- gUAGUAUGaCUGCua--CUGCGG--CUGgg -5'
25515 3' -51.3 NC_005337.1 + 128236 0.66 0.990609
Target:  5'- -----aGCUGAUGggGcuGCGCaCGGCCCu -3'
miRNA:   3'- guaguaUGACUGCuaC--UGCG-GCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 133641 0.66 0.990355
Target:  5'- --cCGUGCagGACGucgccgcgcugGACGCCGACgCg -3'
miRNA:   3'- guaGUAUGa-CUGCua---------CUGCGGCUGgG- -5'
25515 3' -51.3 NC_005337.1 + 133641 0.66 0.990355
Target:  5'- --cCGUGCagGACGucgccgcgcugGACGCCGACgCg -3'
miRNA:   3'- guaGUAUGa-CUGCua---------CUGCGGCUGgG- -5'
25515 3' -51.3 NC_005337.1 + 85358 0.66 0.989285
Target:  5'- gGUCAcGCUGGCGAUGuccACGuCCGAg-- -3'
miRNA:   3'- gUAGUaUGACUGCUAC---UGC-GGCUggg -5'
25515 3' -51.3 NC_005337.1 + 98350 0.66 0.989285
Target:  5'- uCGUCAcGCacgugGACGGgcggaagcugGACGCCGugCUg -3'
miRNA:   3'- -GUAGUaUGa----CUGCUa---------CUGCGGCugGG- -5'
25515 3' -51.3 NC_005337.1 + 89991 0.66 0.989285
Target:  5'- uCGUCgGUGCUccCGGUGACGUCGuCCa -3'
miRNA:   3'- -GUAG-UAUGAcuGCUACUGCGGCuGGg -5'
25515 3' -51.3 NC_005337.1 + 75567 0.66 0.987819
Target:  5'- cCAUCuaccUGCcgacGGCGAUGACGCgacUGACCg -3'
miRNA:   3'- -GUAGu---AUGa---CUGCUACUGCG---GCUGGg -5'
25515 3' -51.3 NC_005337.1 + 96189 0.66 0.987819
Target:  5'- ---uGUACaUGAgcgUGGUGGCGCCcacgGACCCg -3'
miRNA:   3'- guagUAUG-ACU---GCUACUGCGG----CUGGG- -5'
25515 3' -51.3 NC_005337.1 + 130112 0.66 0.987819
Target:  5'- cCGUCAUGgaaGACGGcguUGAgGCCG-CCCu -3'
miRNA:   3'- -GUAGUAUga-CUGCU---ACUgCGGCuGGG- -5'
25515 3' -51.3 NC_005337.1 + 62499 0.66 0.986869
Target:  5'- --aCAUGCUGugcuuggugucguccGCGAUG-CGCUcGCCCa -3'
miRNA:   3'- guaGUAUGAC---------------UGCUACuGCGGcUGGG- -5'
25515 3' -51.3 NC_005337.1 + 74824 0.66 0.986204
Target:  5'- -cUgGUGCUGcUGAuccUGAUGCCGcACCCc -3'
miRNA:   3'- guAgUAUGACuGCU---ACUGCGGC-UGGG- -5'
25515 3' -51.3 NC_005337.1 + 12779 0.66 0.986204
Target:  5'- -----cGCUGccGCGAUGACGa-GGCCCa -3'
miRNA:   3'- guaguaUGAC--UGCUACUGCggCUGGG- -5'
25515 3' -51.3 NC_005337.1 + 38716 0.66 0.986204
Target:  5'- cCGUCGUcCUGACGGgggacaccGGCGUCGGCa- -3'
miRNA:   3'- -GUAGUAuGACUGCUa-------CUGCGGCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.