Results 1 - 20 of 100 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 1613 | 0.68 | 0.486754 |
Target: 5'- -gGCGUGaucccguuCCUcgaucggaggucgAUGCGcGCGCCCGCGGc -3' miRNA: 3'- uaCGUAC--------GGA-------------UACGC-CGCGGGCGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99391 | 0.71 | 0.357216 |
Target: 5'- -gGCAccaccUGCCgGUGCuGCGCaCCGCGGGc -3' miRNA: 3'- uaCGU-----ACGGaUACGcCGCG-GGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99573 | 0.71 | 0.357216 |
Target: 5'- cUGCGgcUGCUcGUGCGGCGCUUcggGCGGGa -3' miRNA: 3'- uACGU--ACGGaUACGCCGCGGG---CGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 123600 | 0.7 | 0.373152 |
Target: 5'- cUGCG-GCCgcacGUGCcGCGCUCGCGGGu -3' miRNA: 3'- uACGUaCGGa---UACGcCGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 10575 | 0.7 | 0.384591 |
Target: 5'- -gGCGUGCCcagccgccgcaCGGCGUCCGUGGAc -3' miRNA: 3'- uaCGUACGGauac-------GCCGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 123124 | 0.7 | 0.389564 |
Target: 5'- -aGCAcGUC-GUGCGGCGCCCgucGCGGu -3' miRNA: 3'- uaCGUaCGGaUACGCCGCGGG---CGCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 47674 | 0.69 | 0.41505 |
Target: 5'- -gGCAUGCUg--GCgGGCGUCCGCGu- -3' miRNA: 3'- uaCGUACGGauaCG-CCGCGGGCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 59655 | 0.68 | 0.478279 |
Target: 5'- gGUGCAccaCCU-UGuCGGCGCCCGCGa- -3' miRNA: 3'- -UACGUac-GGAuAC-GCCGCGGGCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99427 | 0.68 | 0.478279 |
Target: 5'- gGUGCGUGCUgagccGCGGCGUgggccaccUCGUGGAc -3' miRNA: 3'- -UACGUACGGaua--CGCCGCG--------GGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 34178 | 0.71 | 0.334222 |
Target: 5'- -cGCA-GCUccacGCGGCGCgCCGCGGAc -3' miRNA: 3'- uaCGUaCGGaua-CGCCGCG-GGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 99480 | 0.71 | 0.333474 |
Target: 5'- -gGCGUcuucgugGCC-GUGCGGCGCUaCGCGGAc -3' miRNA: 3'- uaCGUA-------CGGaUACGCCGCGG-GCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 122722 | 0.71 | 0.326801 |
Target: 5'- -cGCGUGCUgucGCacGUGCCCGCGGAc -3' miRNA: 3'- uaCGUACGGauaCGc-CGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 17570 | 0.74 | 0.213905 |
Target: 5'- aGUGCuuGUGCCgcgccauUGCGGCcggcucGCCCGCGGGc -3' miRNA: 3'- -UACG--UACGGau-----ACGCCG------CGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 63526 | 0.74 | 0.213905 |
Target: 5'- cGUGCAgGCCUcgggcGUGCGGCGCUCGUuugccGGAc -3' miRNA: 3'- -UACGUaCGGA-----UACGCCGCGGGCG-----CCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 95604 | 0.74 | 0.224579 |
Target: 5'- gGUGCAgcagcgcGCCaugGCGGCGUCCGUGGGc -3' miRNA: 3'- -UACGUa------CGGauaCGCCGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 46002 | 0.72 | 0.284858 |
Target: 5'- -gGcCAUGuCCUccGCGGCGCCCGcCGGc -3' miRNA: 3'- uaC-GUAC-GGAuaCGCCGCGGGC-GCCu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 115140 | 0.72 | 0.297662 |
Target: 5'- -aGCAUcccggGCUUcgaccaccuggagAUGcCGGCGCCCGCGGAc -3' miRNA: 3'- uaCGUA-----CGGA-------------UAC-GCCGCGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 66093 | 0.72 | 0.298348 |
Target: 5'- -gGCGgagGCgCUGUGCGGCGUCUGCGc- -3' miRNA: 3'- uaCGUa--CG-GAUACGCCGCGGGCGCcu -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 76476 | 0.72 | 0.298348 |
Target: 5'- -cGCAg----AUGCGGCuGCCCGCGGAg -3' miRNA: 3'- uaCGUacggaUACGCCG-CGGGCGCCU- -5' |
|||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 738 | 0.71 | 0.319504 |
Target: 5'- -cGCggGCgaGagcGCGGCGCCCGCGGc -3' miRNA: 3'- uaCGuaCGgaUa--CGCCGCGGGCGCCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home