Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25516 | 5' | -60.9 | NC_005337.1 | + | 95604 | 0.74 | 0.224579 |
Target: 5'- gGUGCAgcagcgcGCCaugGCGGCGUCCGUGGGc -3' miRNA: 3'- -UACGUa------CGGauaCGCCGCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 63526 | 0.74 | 0.213905 |
Target: 5'- cGUGCAgGCCUcgggcGUGCGGCGCUCGUuugccGGAc -3' miRNA: 3'- -UACGUaCGGA-----UACGCCGCGGGCG-----CCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 17570 | 0.74 | 0.213905 |
Target: 5'- aGUGCuuGUGCCgcgccauUGCGGCcggcucGCCCGCGGGc -3' miRNA: 3'- -UACG--UACGGau-----ACGCCG------CGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 121104 | 0.76 | 0.162731 |
Target: 5'- -cGCGagGCggAcGCGGCGCCCGCGGAg -3' miRNA: 3'- uaCGUa-CGgaUaCGCCGCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 99573 | 0.71 | 0.357216 |
Target: 5'- cUGCGgcUGCUcGUGCGGCGCUUcggGCGGGa -3' miRNA: 3'- uACGU--ACGGaUACGCCGCGGG---CGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 123600 | 0.7 | 0.373152 |
Target: 5'- cUGCG-GCCgcacGUGCcGCGCUCGCGGGu -3' miRNA: 3'- uACGUaCGGa---UACGcCGCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 10575 | 0.7 | 0.384591 |
Target: 5'- -gGCGUGCCcagccgccgcaCGGCGUCCGUGGAc -3' miRNA: 3'- uaCGUACGGauac-------GCCGCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 105366 | 0.67 | 0.526209 |
Target: 5'- -cGCGUGCUUGgucaccuCGGCGCCCGgcCGGu -3' miRNA: 3'- uaCGUACGGAUac-----GCCGCGGGC--GCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 5829 | 0.67 | 0.526209 |
Target: 5'- cUGCAgagGUCguaccCGGcCGCCCGCGGGg -3' miRNA: 3'- uACGUa--CGGauac-GCC-GCGGGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 29375 | 0.68 | 0.516467 |
Target: 5'- -gGCG-GCCgucGCGGCGCUgGUGGGg -3' miRNA: 3'- uaCGUaCGGauaCGCCGCGGgCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 48615 | 0.68 | 0.506799 |
Target: 5'- -aGCGUGUCUGUGCagaacauGUGCUCgGCGGAc -3' miRNA: 3'- uaCGUACGGAUACGc------CGCGGG-CGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 49346 | 0.68 | 0.497208 |
Target: 5'- -gGCAacucgaUGCUUcUGCGGCGCgUGCGGc -3' miRNA: 3'- uaCGU------ACGGAuACGCCGCGgGCGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 29580 | 0.68 | 0.497208 |
Target: 5'- -aGCAgcuCCUcgGCGGUGUCCgacGCGGAc -3' miRNA: 3'- uaCGUac-GGAuaCGCCGCGGG---CGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 38459 | 0.68 | 0.4877 |
Target: 5'- -gGCGUacGCCUucAUGCGGUGCgCGcCGGGc -3' miRNA: 3'- uaCGUA--CGGA--UACGCCGCGgGC-GCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 97102 | 0.68 | 0.4877 |
Target: 5'- cAUGCugGUGCCgcaGUGGCGCUCgGCGGu -3' miRNA: 3'- -UACG--UACGGauaCGCCGCGGG-CGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 1613 | 0.68 | 0.486754 |
Target: 5'- -gGCGUGaucccguuCCUcgaucggaggucgAUGCGcGCGCCCGCGGc -3' miRNA: 3'- uaCGUAC--------GGA-------------UACGC-CGCGGGCGCCu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 99427 | 0.68 | 0.478279 |
Target: 5'- gGUGCGUGCUgagccGCGGCGUgggccaccUCGUGGAc -3' miRNA: 3'- -UACGUACGGaua--CGCCGCG--------GGCGCCU- -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 59655 | 0.68 | 0.478279 |
Target: 5'- gGUGCAccaCCU-UGuCGGCGCCCGCGa- -3' miRNA: 3'- -UACGUac-GGAuAC-GCCGCGGGCGCcu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 47674 | 0.69 | 0.41505 |
Target: 5'- -gGCAUGCUg--GCgGGCGUCCGCGu- -3' miRNA: 3'- uaCGUACGGauaCG-CCGCGGGCGCcu -5' |
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25516 | 5' | -60.9 | NC_005337.1 | + | 123124 | 0.7 | 0.389564 |
Target: 5'- -aGCAcGUC-GUGCGGCGCCCgucGCGGu -3' miRNA: 3'- uaCGUaCGGaUACGCCGCGGG---CGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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