miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 99174 0.66 0.990464
Target:  5'- gCCGCGCGGaCGaugCGC-GUCGagAUCCg -3'
miRNA:   3'- -GGUGCGUC-GCcaaGCGaUAGCa-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 128563 0.66 0.98913
Target:  5'- aCACGCGGCcuucaUCGa-GUCGUGUCUg -3'
miRNA:   3'- gGUGCGUCGcca--AGCgaUAGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 34855 0.66 0.98913
Target:  5'- aUAUGCGGCGGcgCGCcAUCc--UCCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGaUAGcauAGG- -5'
25519 5' -51.3 NC_005337.1 + 107061 0.66 0.98913
Target:  5'- aCCugGCGGCGGcggCGCgccagGggGUG-CCg -3'
miRNA:   3'- -GGugCGUCGCCaa-GCGa----UagCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 56586 0.66 0.987655
Target:  5'- gCCAUGCuGGUGGcgCGCUcgCa-GUCCa -3'
miRNA:   3'- -GGUGCG-UCGCCaaGCGAuaGcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 47894 0.66 0.987655
Target:  5'- gCGCGCAGUGGUaaaCGCggcCGUcaCCa -3'
miRNA:   3'- gGUGCGUCGCCAa--GCGauaGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 39645 0.66 0.987655
Target:  5'- aCACGCAGCGGcgcggcCGCguggggcgCGUGgccCCg -3'
miRNA:   3'- gGUGCGUCGCCaa----GCGaua-----GCAUa--GG- -5'
25519 5' -51.3 NC_005337.1 + 50769 0.66 0.987655
Target:  5'- gCACGCGuGCGGUUCccgcggucccuGCUcUCGcuguUCCa -3'
miRNA:   3'- gGUGCGU-CGCCAAG-----------CGAuAGCau--AGG- -5'
25519 5' -51.3 NC_005337.1 + 40547 0.66 0.987655
Target:  5'- gCGCGCGGUGGUgcgGUUcUCGaggaUGUCCu -3'
miRNA:   3'- gGUGCGUCGCCAag-CGAuAGC----AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 85973 0.66 0.987655
Target:  5'- cCCGCGCAccgcauGCGGaggCGCgaccgCGgGUCCa -3'
miRNA:   3'- -GGUGCGU------CGCCaa-GCGaua--GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 37443 0.66 0.987655
Target:  5'- gCCACGCcGCGGcugCGCaccCGcagGUCCg -3'
miRNA:   3'- -GGUGCGuCGCCaa-GCGauaGCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 86567 0.66 0.987499
Target:  5'- cCCcCGCAGCacacuguGGggUCGCcGUCGUA-CCg -3'
miRNA:   3'- -GGuGCGUCG-------CCa-AGCGaUAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 109319 0.66 0.987499
Target:  5'- aCCACGCAcGCGGUgaggaugUCGUUcaCGUAgagcacgCCc -3'
miRNA:   3'- -GGUGCGU-CGCCA-------AGCGAuaGCAUa------GG- -5'
25519 5' -51.3 NC_005337.1 + 27489 0.67 0.98603
Target:  5'- uCCACGCGGUagcacccgucGGggUCGaUGUCGUGcgCCa -3'
miRNA:   3'- -GGUGCGUCG----------CCa-AGCgAUAGCAUa-GG- -5'
25519 5' -51.3 NC_005337.1 + 131546 0.67 0.98603
Target:  5'- cCCGCuacCGGCGGacgucgUCGCgcUCGUGcUCCu -3'
miRNA:   3'- -GGUGc--GUCGCCa-----AGCGauAGCAU-AGG- -5'
25519 5' -51.3 NC_005337.1 + 69361 0.67 0.98603
Target:  5'- cCCGCGCGGgcCGGc-CGCUAgCGccagGUCCg -3'
miRNA:   3'- -GGUGCGUC--GCCaaGCGAUaGCa---UAGG- -5'
25519 5' -51.3 NC_005337.1 + 33220 0.67 0.98603
Target:  5'- uUCACGCAgguGCGGUUCGUgagcaCG-AUCUc -3'
miRNA:   3'- -GGUGCGU---CGCCAAGCGaua--GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 85747 0.67 0.98603
Target:  5'- aCGCGgAcGCGGUcUGCUGcagcucauugCGUAUCCg -3'
miRNA:   3'- gGUGCgU-CGCCAaGCGAUa---------GCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 43828 0.67 0.984246
Target:  5'- uCCACGCugcAGCGGgccggcggCGCgguggagAUCGUGUaCUg -3'
miRNA:   3'- -GGUGCG---UCGCCaa------GCGa------UAGCAUA-GG- -5'
25519 5' -51.3 NC_005337.1 + 104559 0.67 0.984246
Target:  5'- aCCGCGCGcGCGuGcgCGCcUcgCGcGUCCg -3'
miRNA:   3'- -GGUGCGU-CGC-CaaGCG-AuaGCaUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.