Results 1 - 20 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 5' | -60.4 | NC_005337.1 | + | 128215 | 0.66 | 0.682041 |
Target: 5'- gGCGCcGCUcgUGGCCGCGG---GCGCg -3' miRNA: 3'- -CGCGcCGGuaGCUGGCGUCgcaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 41397 | 0.66 | 0.70946 |
Target: 5'- cGCGCGGgCAgaugacguccggCGuCCGCgggAGCGUGC-Cg -3' miRNA: 3'- -CGCGCCgGUa-----------GCuGGCG---UCGCACGcG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 39808 | 0.66 | 0.701668 |
Target: 5'- aGUGCGGCCGagCGAcCCGgAGC-UGCu- -3' miRNA: 3'- -CGCGCCGGUa-GCU-GGCgUCGcACGcg -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 89796 | 0.66 | 0.730671 |
Target: 5'- aCGCGGCCGcgccUCGaACUGgccucagcuCGGCGagGCGCu -3' miRNA: 3'- cGCGCCGGU----AGC-UGGC---------GUCGCa-CGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 35745 | 0.66 | 0.701668 |
Target: 5'- aCGCGGCCGUCGGgCGggcucccccCGGCcuUGcCGCg -3' miRNA: 3'- cGCGCCGGUAGCUgGC---------GUCGc-AC-GCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 67744 | 0.66 | 0.681055 |
Target: 5'- gGCGCGGCgCGcagcuccagcgucUCGGCCggcuGCAGCGgcuccaGCGa -3' miRNA: 3'- -CGCGCCG-GU-------------AGCUGG----CGUCGCa-----CGCg -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 6014 | 0.66 | 0.700691 |
Target: 5'- -aGCGGUCAcCGggcgggcGCCaGCAGggcCGUGCGCa -3' miRNA: 3'- cgCGCCGGUaGC-------UGG-CGUC---GCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 50404 | 0.66 | 0.691878 |
Target: 5'- cGCGCcGCgCGUCGGugaCGgAGCGgcggGCGCu -3' miRNA: 3'- -CGCGcCG-GUAGCUg--GCgUCGCa---CGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 29800 | 0.66 | 0.701668 |
Target: 5'- uGCGCGuGCuCcgCGugcuCCGCGuacuGUGUGUGCu -3' miRNA: 3'- -CGCGC-CG-GuaGCu---GGCGU----CGCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 127828 | 0.66 | 0.701668 |
Target: 5'- cGUGCGGagcguCGUCGACCGCA-CGc-CGCu -3' miRNA: 3'- -CGCGCCg----GUAGCUGGCGUcGCacGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 98988 | 0.66 | 0.682041 |
Target: 5'- aGCGgGGCCGagGuggaGCCGCcccccgAG-GUGCGCg -3' miRNA: 3'- -CGCgCCGGUagC----UGGCG------UCgCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 84467 | 0.66 | 0.690896 |
Target: 5'- gGCGCGGCCGgcaccuCCGuCAGCGacgugacccccucUGCGa -3' miRNA: 3'- -CGCGCCGGUagcu--GGC-GUCGC-------------ACGCg -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 110944 | 0.66 | 0.691878 |
Target: 5'- aGUGUGGg---CGACCGCGucuGCGUGuCGCc -3' miRNA: 3'- -CGCGCCgguaGCUGGCGU---CGCAC-GCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 98438 | 0.66 | 0.682041 |
Target: 5'- aGCGCacgaacuuGUCGggaUCGGCCugcgGCAuGCGUGCGCa -3' miRNA: 3'- -CGCGc-------CGGU---AGCUGG----CGU-CGCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 44572 | 0.66 | 0.691878 |
Target: 5'- aCGCGGCCGccgCGAucggcgucuCCGCcaagGGCGUGUuccgGCg -3' miRNA: 3'- cGCGCCGGUa--GCU---------GGCG----UCGCACG----CG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 132428 | 0.66 | 0.708488 |
Target: 5'- aCGCGGCCAcCaACUGCGcgcucgccaaagucGCGaGCGCg -3' miRNA: 3'- cGCGCCGGUaGcUGGCGU--------------CGCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 1576 | 0.66 | 0.700691 |
Target: 5'- gGCGCGGCCcagGUUGugCGCgacgauguuguccAGgG-GCGUg -3' miRNA: 3'- -CGCGCCGG---UAGCugGCG-------------UCgCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 39941 | 0.66 | 0.691878 |
Target: 5'- uGCGCGGCgGgCGcCuCGC-GCGgGCGCu -3' miRNA: 3'- -CGCGCCGgUaGCuG-GCGuCGCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 90291 | 0.66 | 0.688931 |
Target: 5'- aGCGUcucGGCCuccUCGccgccgggcgcgccGCCGUAGaugGUGCGCg -3' miRNA: 3'- -CGCG---CCGGu--AGC--------------UGGCGUCg--CACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 6268 | 0.66 | 0.685981 |
Target: 5'- uGCGCGGagCA-CGuCCaGCAGCGUcgugucggcguugcaGCGCa -3' miRNA: 3'- -CGCGCCg-GUaGCuGG-CGUCGCA---------------CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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