miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 3' -55.8 NC_005337.1 + 24142 0.66 0.89752
Target:  5'- cCAACACaaccacaCGCAGCCAUGGcuuccuACGAc- -3'
miRNA:   3'- -GUUGUGgcg----GCGUCGGUACC------UGCUuc -5'
25527 3' -55.8 NC_005337.1 + 94640 0.66 0.89752
Target:  5'- -cGCGCCGCUGCGuGUaCAUGGcccGCGAGa -3'
miRNA:   3'- guUGUGGCGGCGU-CG-GUACC---UGCUUc -5'
25527 3' -55.8 NC_005337.1 + 50947 0.66 0.89752
Target:  5'- gGGCGCCucgcGCCGCgccccuAGCCGgucgaccGGGCGggGc -3'
miRNA:   3'- gUUGUGG----CGGCG------UCGGUa------CCUGCuuC- -5'
25527 3' -55.8 NC_005337.1 + 76843 0.66 0.89752
Target:  5'- -cGCAgCGCaCGCGGUagAUGGACGGGc -3'
miRNA:   3'- guUGUgGCG-GCGUCGg-UACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 21409 0.66 0.89752
Target:  5'- gCGGCAUCgucgacguggGCCGCGGCCAgcucGCGGAGc -3'
miRNA:   3'- -GUUGUGG----------CGGCGUCGGUacc-UGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 1211 0.66 0.89752
Target:  5'- cCAcCGgCGCCGCGuaCGcGGACGAAGc -3'
miRNA:   3'- -GUuGUgGCGGCGUcgGUaCCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 93533 0.66 0.89752
Target:  5'- aCGAUGCgGCCGCAGU--UGGACa--- -3'
miRNA:   3'- -GUUGUGgCGGCGUCGguACCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 104721 0.66 0.89752
Target:  5'- --cCGCCGCCGCGGCgGcGGcaucaagaucgGCGAGa -3'
miRNA:   3'- guuGUGGCGGCGUCGgUaCC-----------UGCUUc -5'
25527 3' -55.8 NC_005337.1 + 118782 0.66 0.89752
Target:  5'- gCGACGCUGuCCGCAGCagcgccGACGAc- -3'
miRNA:   3'- -GUUGUGGC-GGCGUCGguac--CUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 110210 0.66 0.89752
Target:  5'- gAugGCgGCCGCGGCCGcGGccGCGucGc -3'
miRNA:   3'- gUugUGgCGGCGUCGGUaCC--UGCuuC- -5'
25527 3' -55.8 NC_005337.1 + 48644 0.66 0.89752
Target:  5'- gGACGCCaGCgCGCAGC--UGGACGccGu -3'
miRNA:   3'- gUUGUGG-CG-GCGUCGguACCUGCuuC- -5'
25527 3' -55.8 NC_005337.1 + 88512 0.66 0.89353
Target:  5'- gGACAgCGCCGCgcgguacgaacgcggGGCCGUGcuaGACGGc- -3'
miRNA:   3'- gUUGUgGCGGCG---------------UCGGUAC---CUGCUuc -5'
25527 3' -55.8 NC_005337.1 + 97866 0.66 0.89353
Target:  5'- gGugGCCGCCGCcgugcucaaccgcauGGUCAUGGAgcaGAu- -3'
miRNA:   3'- gUugUGGCGGCG---------------UCGGUACCUg--CUuc -5'
25527 3' -55.8 NC_005337.1 + 84081 0.66 0.890824
Target:  5'- aGACGCgCGCCGCAGagcgcggaCAcGGGCGcGGu -3'
miRNA:   3'- gUUGUG-GCGGCGUCg-------GUaCCUGCuUC- -5'
25527 3' -55.8 NC_005337.1 + 46754 0.66 0.890824
Target:  5'- cCAugACgggcaGCCGCuuccuGCuCGUGGACGAGc -3'
miRNA:   3'- -GUugUGg----CGGCGu----CG-GUACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 21066 0.66 0.890824
Target:  5'- --gUACuCGCCGUAGUCGUGGuccCGGAc -3'
miRNA:   3'- guuGUG-GCGGCGUCGGUACCu--GCUUc -5'
25527 3' -55.8 NC_005337.1 + 124009 0.66 0.890824
Target:  5'- gAACG-CGCCGCcGCCgAUGGaggcgccccGCGAAGg -3'
miRNA:   3'- gUUGUgGCGGCGuCGG-UACC---------UGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 6702 0.66 0.890824
Target:  5'- aCGGCugCGCCcgccuccagcaGCAGCCGgacaacgcGGACGucGAGg -3'
miRNA:   3'- -GUUGugGCGG-----------CGUCGGUa-------CCUGC--UUC- -5'
25527 3' -55.8 NC_005337.1 + 131592 0.66 0.890824
Target:  5'- -----aCGCCGCAGCUccGGACGu-- -3'
miRNA:   3'- guugugGCGGCGUCGGuaCCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 123321 0.66 0.890824
Target:  5'- gAAUACgCGCuCGCuaaAGCCAgGGACGGGa -3'
miRNA:   3'- gUUGUG-GCG-GCG---UCGGUaCCUGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.