miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 3' -60.3 NC_005337.1 + 13770 0.66 0.715978
Target:  5'- uGGUGCaGCGCCcgaacuUGaGGGCGUCGC-CGg -3'
miRNA:   3'- cUCACG-CGCGG------ACcUUCGCAGCGcGC- -5'
25528 3' -60.3 NC_005337.1 + 48002 0.66 0.715978
Target:  5'- --cUGCGUgGCCUGGAuccGCG-CGCuGCGg -3'
miRNA:   3'- cucACGCG-CGGACCUu--CGCaGCG-CGC- -5'
25528 3' -60.3 NC_005337.1 + 105783 0.66 0.715978
Target:  5'- ---cGCGCGCCgc---GCGcCGCGCGg -3'
miRNA:   3'- cucaCGCGCGGaccuuCGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 25285 0.66 0.715978
Target:  5'- gGAGUucGCGCGCaC-GGcGGGCGggcCGCGCGu -3'
miRNA:   3'- -CUCA--CGCGCG-GaCC-UUCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 68313 0.66 0.706179
Target:  5'- ---cGCGUGCCcgaGGAgGGCGgcaCGCGCGu -3'
miRNA:   3'- cucaCGCGCGGa--CCU-UCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 10413 0.66 0.706179
Target:  5'- aGGUGCggcuGCGCCcaGGAggacgccugcgcGGCGgugCGCGCGu -3'
miRNA:   3'- cUCACG----CGCGGa-CCU------------UCGCa--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 104180 0.66 0.706179
Target:  5'- aGGUGCGCGCgCUcaccgugcGcGAGCGcCGCGCc -3'
miRNA:   3'- cUCACGCGCG-GA--------CcUUCGCaGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 62982 0.66 0.706179
Target:  5'- aAGUGCGUGC--GGAAGCGcaccaGCGCc -3'
miRNA:   3'- cUCACGCGCGgaCCUUCGCag---CGCGc -5'
25528 3' -60.3 NC_005337.1 + 99016 0.66 0.696319
Target:  5'- aGGUGCGCgcgGCCUGcGAGGCGcUgGaCGCc -3'
miRNA:   3'- cUCACGCG---CGGAC-CUUCGC-AgC-GCGc -5'
25528 3' -60.3 NC_005337.1 + 119404 0.66 0.69533
Target:  5'- gGAGU-CGCGUC-GGAAGUcucgcccGUCGCGCc -3'
miRNA:   3'- -CUCAcGCGCGGaCCUUCG-------CAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 101520 0.66 0.686407
Target:  5'- ---cGCGCGgCUGGAGGCcGUgGaCGUGa -3'
miRNA:   3'- cucaCGCGCgGACCUUCG-CAgC-GCGC- -5'
25528 3' -60.3 NC_005337.1 + 41798 0.66 0.686407
Target:  5'- aAGuUGCGCGCCgucGAGGCGUuCGCcaggaaccgGCGg -3'
miRNA:   3'- cUC-ACGCGCGGac-CUUCGCA-GCG---------CGC- -5'
25528 3' -60.3 NC_005337.1 + 13625 0.66 0.686407
Target:  5'- cGGGUGaagaGCaccucGUCUGGAAGCaggaCGCGCGg -3'
miRNA:   3'- -CUCACg---CG-----CGGACCUUCGca--GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 113604 0.66 0.686407
Target:  5'- cGGGUGCcCGCCccucUGGuccGCGcCGUGCGa -3'
miRNA:   3'- -CUCACGcGCGG----ACCuu-CGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 10615 0.66 0.686407
Target:  5'- gGAGcgGCgGCGCCaGGAcgacCGUCGCGCc -3'
miRNA:   3'- -CUCa-CG-CGCGGaCCUuc--GCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 87915 0.66 0.686407
Target:  5'- ---gGCGCGCCUGcgccGGCGcuUCGUGCa -3'
miRNA:   3'- cucaCGCGCGGACcu--UCGC--AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 118150 0.66 0.685413
Target:  5'- cGGUGC-CGCCaUGGAgguugacGGCGcCGCgGCGg -3'
miRNA:   3'- cUCACGcGCGG-ACCU-------UCGCaGCG-CGC- -5'
25528 3' -60.3 NC_005337.1 + 98485 0.66 0.676452
Target:  5'- aGGG-GCGCGCC-GGcGGCGUccgucaugacaCGCGCc -3'
miRNA:   3'- -CUCaCGCGCGGaCCuUCGCA-----------GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 86836 0.66 0.676452
Target:  5'- -cGUGUGCGCCUGGcuGCGcaggaaGCaGCa -3'
miRNA:   3'- cuCACGCGCGGACCuuCGCag----CG-CGc -5'
25528 3' -60.3 NC_005337.1 + 125952 0.66 0.676452
Target:  5'- cGAG-GCGgGCgUGGgcGUGaaCGCGCGg -3'
miRNA:   3'- -CUCaCGCgCGgACCuuCGCa-GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.