miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 3' -60.3 NC_005337.1 + 93284 0.69 0.479724
Target:  5'- gGGGUGCgucgGCGCCUGGuGGCgGUCGaGCu -3'
miRNA:   3'- -CUCACG----CGCGGACCuUCG-CAGCgCGc -5'
25528 3' -60.3 NC_005337.1 + 21911 0.71 0.400087
Target:  5'- ---cGCGCGCUucaUGGAGGUGgcCGCGCGc -3'
miRNA:   3'- cucaCGCGCGG---ACCUUCGCa-GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 52089 0.7 0.425705
Target:  5'- -cGUGCGCGCCcggcGGccGCGUgcaggUGCGCGa -3'
miRNA:   3'- cuCACGCGCGGa---CCuuCGCA-----GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 128298 0.7 0.434459
Target:  5'- ---cGCGCGCCUGGcgccgucuGC-UCGCGCGc -3'
miRNA:   3'- cucaCGCGCGGACCuu------CGcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 54263 0.7 0.452274
Target:  5'- cGGGUGCgGCGCUU---AGCGcCGCGCGg -3'
miRNA:   3'- -CUCACG-CGCGGAccuUCGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 39939 0.7 0.452274
Target:  5'- -cGUGCGCGgC-GGgcGCcUCGCGCGg -3'
miRNA:   3'- cuCACGCGCgGaCCuuCGcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 691 0.7 0.461331
Target:  5'- --uUGCGCGC--GGAGGCGaagcUCGCGCGc -3'
miRNA:   3'- cucACGCGCGgaCCUUCGC----AGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 69464 0.7 0.470482
Target:  5'- -----aGCGCCUGGGuguuccGGCGUCGUGCc -3'
miRNA:   3'- cucacgCGCGGACCU------UCGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 120369 0.7 0.470482
Target:  5'- cGGGacccgGCGCGCCUGccGGC-UCGUGCGg -3'
miRNA:   3'- -CUCa----CGCGCGGACcuUCGcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 36613 0.71 0.383564
Target:  5'- ---cGCG-GCCUGGAGcGCG-CGCGCGa -3'
miRNA:   3'- cucaCGCgCGGACCUU-CGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 130162 0.71 0.375475
Target:  5'- ---cGCGCGCUUucGGAGGcCGUgCGCGCGg -3'
miRNA:   3'- cucaCGCGCGGA--CCUUC-GCA-GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 109904 0.72 0.367501
Target:  5'- ---cGUGCGCgUGGAAgacGUGUCGCGUGg -3'
miRNA:   3'- cucaCGCGCGgACCUU---CGCAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 99149 0.76 0.187329
Target:  5'- cGAGUGCGcCGCaCUGGGcguccGCGcCGCGCGg -3'
miRNA:   3'- -CUCACGC-GCG-GACCUu----CGCaGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 38579 0.75 0.222088
Target:  5'- -cGUGCaCGCCaaGGAGGCGUgGCGCGa -3'
miRNA:   3'- cuCACGcGCGGa-CCUUCGCAgCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 1001 0.74 0.262189
Target:  5'- gGAGggcggGCGuCGCCUGGAGGCcGUCgaauuucacuuuGCGCGg -3'
miRNA:   3'- -CUCa----CGC-GCGGACCUUCG-CAG------------CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 38475 0.74 0.262189
Target:  5'- cGGUGCGCGCC-GGgcGCG-CGCGUc -3'
miRNA:   3'- cUCACGCGCGGaCCuuCGCaGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 89891 0.73 0.287645
Target:  5'- gGAGaGCGCGCUguucacgauguUGGAcGUGUCGCGCa -3'
miRNA:   3'- -CUCaCGCGCGG-----------ACCUuCGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 97974 0.73 0.293634
Target:  5'- -cGUGCGCGCCauccgcgacaccgUGGccGCGuUCGCGCa -3'
miRNA:   3'- cuCACGCGCGG-------------ACCuuCGC-AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 95612 0.73 0.315005
Target:  5'- ---aGCGCGCCaUGGcGGCGUCcguggGCGCGg -3'
miRNA:   3'- cucaCGCGCGG-ACCuUCGCAG-----CGCGC- -5'
25528 3' -60.3 NC_005337.1 + 109173 0.72 0.348844
Target:  5'- ---cGCGCGCCgcgccgcgcgggcGGAgcucGGCGUCGCGCa -3'
miRNA:   3'- cucaCGCGCGGa------------CCU----UCGCAGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.