miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 5' -54.2 NC_005337.1 + 40044 0.66 0.955825
Target:  5'- cGUCGuCGCGGUGcgCCGaacCGGGgaccgguaccGCGCGg -3'
miRNA:   3'- -CAGC-GCGCUAUaaGGU---GCCCa---------UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 81016 0.66 0.955436
Target:  5'- -gCGCGCGAag-UCCgggcguggagaugGCGGGgaUGCGCa -3'
miRNA:   3'- caGCGCGCUauaAGG-------------UGCCC--AUGCGc -5'
25528 5' -54.2 NC_005337.1 + 49109 0.66 0.951828
Target:  5'- -gUGCGCGAgGUcaucgacucgcUCCGCGGGaagcuCGCGc -3'
miRNA:   3'- caGCGCGCUaUA-----------AGGUGCCCau---GCGC- -5'
25528 5' -54.2 NC_005337.1 + 96810 0.66 0.951416
Target:  5'- -cCGUGgGucUGUUCUcggaccuGCGGGUGCGCa -3'
miRNA:   3'- caGCGCgCu-AUAAGG-------UGCCCAUGCGc -5'
25528 5' -54.2 NC_005337.1 + 9753 0.66 0.947596
Target:  5'- -gCGCGCGucgg-CCGgcgcCGGGUugGCa -3'
miRNA:   3'- caGCGCGCuauaaGGU----GCCCAugCGc -5'
25528 5' -54.2 NC_005337.1 + 75627 0.66 0.947596
Target:  5'- -gCGCGCGug--UCC-CGcGUGCGCGa -3'
miRNA:   3'- caGCGCGCuauaAGGuGCcCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 50869 0.66 0.947596
Target:  5'- uGUCGCugauaaaccGCGAggacaugGUUUgGCGGGcGCGCGc -3'
miRNA:   3'- -CAGCG---------CGCUa------UAAGgUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 31908 0.66 0.947596
Target:  5'- --aGCGCGGUGg-CCA--GGUGCGCGg -3'
miRNA:   3'- cagCGCGCUAUaaGGUgcCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 77766 0.66 0.947596
Target:  5'- -cCGCGCGccucggggUCCGCGGaGUugGgGa -3'
miRNA:   3'- caGCGCGCuaua----AGGUGCC-CAugCgC- -5'
25528 5' -54.2 NC_005337.1 + 39425 0.66 0.94628
Target:  5'- -aCGCGCGGgcgcccgcucgggCCGCGcucGGUGCGCa -3'
miRNA:   3'- caGCGCGCUauaa---------GGUGC---CCAUGCGc -5'
25528 5' -54.2 NC_005337.1 + 105409 0.66 0.945837
Target:  5'- cUCGCGCGcgcugaucgCCGuCGGGUGCaucGCGg -3'
miRNA:   3'- cAGCGCGCuauaa----GGU-GCCCAUG---CGC- -5'
25528 5' -54.2 NC_005337.1 + 75913 0.66 0.943126
Target:  5'- -gCGCGCGAag-UCCGCGaagaGCGCGg -3'
miRNA:   3'- caGCGCGCUauaAGGUGCcca-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 126204 0.66 0.943126
Target:  5'- cGUCGCGCG----UCCuCGcGGU-CGCGg -3'
miRNA:   3'- -CAGCGCGCuauaAGGuGC-CCAuGCGC- -5'
25528 5' -54.2 NC_005337.1 + 35872 0.66 0.943126
Target:  5'- -aCGCGCGGaa--CUGCGGGacgugUGCGCGg -3'
miRNA:   3'- caGCGCGCUauaaGGUGCCC-----AUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 10246 0.66 0.943126
Target:  5'- -gCGCGCGGcc-UUCGCGGG-GCGCc -3'
miRNA:   3'- caGCGCGCUauaAGGUGCCCaUGCGc -5'
25528 5' -54.2 NC_005337.1 + 127149 0.66 0.938414
Target:  5'- -cCGCGUGcUGaUCCGCGcGG-GCGCGg -3'
miRNA:   3'- caGCGCGCuAUaAGGUGC-CCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 35708 0.66 0.933459
Target:  5'- --aGCGCGGgcuccgUCUACcGGUGCGUGg -3'
miRNA:   3'- cagCGCGCUaua---AGGUGcCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41743 0.66 0.933459
Target:  5'- cUCGCGCaccgcgUCCAUGGGgcggccGCGCa -3'
miRNA:   3'- cAGCGCGcuaua-AGGUGCCCa-----UGCGc -5'
25528 5' -54.2 NC_005337.1 + 36982 0.67 0.92826
Target:  5'- cGUCGCucaugaucuccGCGGUcuccagCCGCGGGgACGUGg -3'
miRNA:   3'- -CAGCG-----------CGCUAuaa---GGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 1189 0.67 0.92826
Target:  5'- -gUGCGCGAgcgcggCACGGGcGCGCa -3'
miRNA:   3'- caGCGCGCUauaag-GUGCCCaUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.