miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 5' -54.2 NC_005337.1 + 567 0.69 0.830757
Target:  5'- -cCGCGCGuacg-CCGCGGccGCGCGg -3'
miRNA:   3'- caGCGCGCuauaaGGUGCCcaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 567 0.69 0.830757
Target:  5'- -cCGCGCGuacg-CCGCGGccGCGCGg -3'
miRNA:   3'- caGCGCGCuauaaGGUGCCcaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 709 0.75 0.524905
Target:  5'- cUCGCGCGcacgcccgcggCCGCgGGGUACGCGg -3'
miRNA:   3'- cAGCGCGCuauaa------GGUG-CCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 709 0.75 0.524905
Target:  5'- cUCGCGCGcacgcccgcggCCGCgGGGUACGCGg -3'
miRNA:   3'- cAGCGCGCuauaa------GGUG-CCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 1138 0.75 0.543943
Target:  5'- -gCGCGCGAccagcUCCGCGGGgaGCGCGc -3'
miRNA:   3'- caGCGCGCUaua--AGGUGCCCa-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 1189 0.67 0.92826
Target:  5'- -gUGCGCGAgcgcggCACGGGcGCGCa -3'
miRNA:   3'- caGCGCGCUauaag-GUGCCCaUGCGc -5'
25528 5' -54.2 NC_005337.1 + 2365 0.67 0.922816
Target:  5'- -cCGCGCcaGGUGcUCUAuCGGGUGCGuCGa -3'
miRNA:   3'- caGCGCG--CUAUaAGGU-GCCCAUGC-GC- -5'
25528 5' -54.2 NC_005337.1 + 6391 0.76 0.494413
Target:  5'- -gCGuCGUGAUcgUCCcCGGGUGCGUGg -3'
miRNA:   3'- caGC-GCGCUAuaAGGuGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 6897 0.69 0.839128
Target:  5'- uGUCGCGCGcg----CGCGGGUcCGCGc -3'
miRNA:   3'- -CAGCGCGCuauaagGUGCCCAuGCGC- -5'
25528 5' -54.2 NC_005337.1 + 9753 0.66 0.947596
Target:  5'- -gCGCGCGucgg-CCGgcgcCGGGUugGCa -3'
miRNA:   3'- caGCGCGCuauaaGGU----GCCCAugCGc -5'
25528 5' -54.2 NC_005337.1 + 10100 0.68 0.891953
Target:  5'- -gCGgGCGAgg-UCCACGaaGGUcACGCGg -3'
miRNA:   3'- caGCgCGCUauaAGGUGC--CCA-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 10246 0.66 0.943126
Target:  5'- -gCGCGCGGcc-UUCGCGGG-GCGCc -3'
miRNA:   3'- caGCGCGCUauaAGGUGCCCaUGCGc -5'
25528 5' -54.2 NC_005337.1 + 12047 0.67 0.90502
Target:  5'- -gCGUGCGGUcgUCC--GGcGUGCGCGc -3'
miRNA:   3'- caGCGCGCUAuaAGGugCC-CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 12163 0.7 0.804567
Target:  5'- aUCGCGuUGAUG-UCCGCGccGUGCGCGa -3'
miRNA:   3'- cAGCGC-GCUAUaAGGUGCc-CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 17048 0.71 0.738288
Target:  5'- -cCGCGCGGUcugcacGUUCCGCuGGaUGCGCa -3'
miRNA:   3'- caGCGCGCUA------UAAGGUGcCC-AUGCGc -5'
25528 5' -54.2 NC_005337.1 + 24709 0.81 0.247337
Target:  5'- aUCGUgcaccccGCGGaGUUCCGCGGGUACGCGc -3'
miRNA:   3'- cAGCG-------CGCUaUAAGGUGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 28249 0.68 0.877953
Target:  5'- cGUCGCGCGGca--CCACGcgcacGUGCGUGg -3'
miRNA:   3'- -CAGCGCGCUauaaGGUGCc----CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 29752 0.67 0.917127
Target:  5'- cUCGaccuCGgGGUcgUCCAaccgggcgucCGGGUGCGCGa -3'
miRNA:   3'- cAGC----GCgCUAuaAGGU----------GCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 31908 0.66 0.947596
Target:  5'- --aGCGCGGUGg-CCA--GGUGCGCGg -3'
miRNA:   3'- cagCGCGCUAUaaGGUgcCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 34149 0.71 0.728364
Target:  5'- -aCGCGgGGUGcaacaggUCCACGGGgaUGCGCa -3'
miRNA:   3'- caGCGCgCUAUa------AGGUGCCC--AUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.